Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11k06
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   1.6  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   1.6  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   1.6  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   1.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   1.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   1.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.0  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 413 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 496
           I+R G  S  +F  + + N +  +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 413 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 496
           I+R G  S  +F  + + N +  +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 413 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 496
           I+R G  S  +F  + + N +  +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 413 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 496
           I+R G  S  +F  + + N +  +NK+KE
Sbjct: 152 IRRTGEGSKPIFEREEIKNVLTKINKIKE 180


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 413 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 496
           I+R G  S  +F  + + N +  +NK+KE
Sbjct: 168 IRRTGEGSKPIFEREEIKNVLTKINKIKE 196


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 413 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 496
           I+R G  S  +F  + + N +  +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 413 IKRLGS-SDVVFSSDYVPNAMNVLNKVKE 496
           I+R G  S  +F  + + N +  +NK+KE
Sbjct: 163 IRRTGEGSKPIFEREEIKNVLTKINKIKE 191


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/12 (50%), Positives = 6/12 (50%)
 Frame = -1

Query: 537 SCCAWLCTGFRG 502
           SCC W C    G
Sbjct: 10  SCCCWCCDNLGG 21


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 296 AQCPPCGWPAAPFRG 252
           A   PC W A P++G
Sbjct: 296 ANTKPCTWAARPWQG 310


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 296 AQCPPCGWPAAPFRG 252
           A   PC W A P++G
Sbjct: 296 ANTKPCTWAARPWQG 310


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 296 AQCPPCGWPAAPFRG 252
           A   PC W A P++G
Sbjct: 296 ANTKPCTWAARPWQG 310


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 143 QTPTFYLTLQSHHNLCPS*R 84
           QT   Y   Q+H  LCP+ R
Sbjct: 367 QTSVHYSNGQTHSQLCPTPR 386


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 241 KRGAPRNGAAGQPHGG 288
           +RG+P N + G P GG
Sbjct: 35  QRGSPPNPSQGPPPGG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,860
Number of Sequences: 438
Number of extensions: 3173
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)