Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11k05
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   1.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   1.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   2.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   8.7  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 334 HSYIICYLLSICTW 375
           H+YI+  +LS+ TW
Sbjct: 3   HNYIVILILSLLTW 16


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 334 HSYIICYLLSICTW 375
           H+YI+  +LS+ TW
Sbjct: 3   HNYIVILILSLLTW 16


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 301 TSNLHHLHYKKVSTL 257
           T +L HLHY++  TL
Sbjct: 358 TQSLQHLHYRQPPTL 372


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 337 SGNLVPILLVTA 302
           +GN VP+LLVTA
Sbjct: 2   AGNSVPVLLVTA 13


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 121 MLSWTIFWSRH 153
           MLSW  FW  H
Sbjct: 257 MLSWVSFWINH 267


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/45 (26%), Positives = 16/45 (35%)
 Frame = +1

Query: 118 FMLSWTIFWSRHFFCVHLLCNIHVCVSII*ACSIDLFKVHHVKYS 252
           + L W  + S      H L      V +  AC+    K H V  S
Sbjct: 11  YCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLS 55


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 74  TEYGRKKQSWLKIANLCYHGLFFGV 148
           T + R + +WLK     YH  FF V
Sbjct: 47  TGFPRPEITWLKDGIELYHHKFFQV 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,217
Number of Sequences: 438
Number of extensions: 2992
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)