Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11j17
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   225   2e-59
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.58 
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical...    27   7.2  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  225 bits (549), Expect = 2e-59
 Identities = 99/140 (70%), Positives = 124/140 (88%)
 Frame = +1

Query: 52  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLAEPRLLQYKLQEPILLLGKEKFSMV 231
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+  EP++L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 232 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 411
           DIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I   YD+SLLVADPRR
Sbjct: 65  DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRR 124

Query: 412 CEPKKFGGPGARARYQKSYR 471
            E KKFGGPGARARYQKSYR
Sbjct: 125 RESKKFGGPGARARYQKSYR 144


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 328 YVDEASKKEIKDILVQYDRSLLVADPRRCE 417
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 388 LLVADPRRCEPKKFGGPGARARY 456
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical
           protein C42D4.2 protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 256 GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPK 423
           GG VA + +    ++  L + +Q+Y+  +S      + +Q +R+   A+   C PK
Sbjct: 129 GGTVASMLSFSTKVNTDL-SLFQQYISMSSPTNFDTLELQVERTYRFAEHANCLPK 183


>AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical
           protein Y37A1B.9 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 222 LHGRHQSDSQGWWSCSTSLRYPTSYFKGSDRLLPEIC 332
           +H   +    GW S    L Y T+Y    + L P+ C
Sbjct: 267 IHDNPEMTRLGWTSLEYKLGYRTTYIMNLENLHPDFC 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,373
Number of Sequences: 27780
Number of extensions: 293598
Number of successful extensions: 778
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)