Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11j13
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    28   0.47 
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    26   1.4  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   1.4  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   1.9  
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   2.5  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   3.3  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   4.4  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   4.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   4.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   7.6  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    24   7.6  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    24   7.6  

>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 0.47
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +1

Query: 85  AIQCINEKLYDKHYKIRKIAKRVI 156
           A++CIN+K +D+H KI+K+   V+
Sbjct: 57  ALKCINKKKHDEH-KIKKLRNEVL 79


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 246 KYILITIIHVFILQYFLYNLF 184
           +Y+L+ II +  L YF+YN F
Sbjct: 5   EYVLLVIILILSLCYFIYNNF 25


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 210 LQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFF 103
           L  F   LF  +  T+HV   F  +  F  F+ +FF
Sbjct: 246 LAAFYRGLFPSLFGTLHVGIQFPLYEYFKSFLDDFF 281


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 270  FYILFIRNKYILITIIHVFILQYFLYNLFNYIMSTIHVD 154
            F ++FI  +YI I  I V +L    + LFN  +S  + D
Sbjct: 1432 FKLVFIEMQYINIISIIVLVLTSLAWFLFNIFISEHYPD 1470


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 58  DGVHPNPLLAIQCINEKLYD 117
           D ++PN L  ++ INEK +D
Sbjct: 5   DAINPNNLKILEVINEKCFD 24


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = -3

Query: 228 IIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVHTVI 55
           +I + I   ++Y  F YI + IH +    +F     F+   F +       +W H+++
Sbjct: 281 VISLIIAPLWIYFTFKYITTCIHANIDIVHFYLETPFLAGIFSSIF---FWVWCHSLL 335


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 189 LFNYIMSTIHVDYTF 145
           LFNY++S IH D ++
Sbjct: 527 LFNYVLSLIHFDMSY 541


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 10  FRKRKMRFEDDMEVLYDGVHPNPL 81
           FRKR++   +D ++L D VH N +
Sbjct: 119 FRKRELFTLEDEKILIDHVHKNDI 142


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -3

Query: 201 FLYNLFNYIMSTIHVDYTFSYFSNFVMFI 115
           F+ +  N+   +I+ +Y+F  F+N +M +
Sbjct: 437 FILDSQNFFFESINTEYSFIIFTNLLMHL 465


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -3

Query: 279  IKLFYILFIRNKYILITIIHVFILQYFLYNLFN---YIMSTIHVDYTFSYFSNFVMFIVE 109
            I  FY    R + I+   I VF+  Y++ +++      M + H  + ++ F   ++F V 
Sbjct: 2172 IPAFYRSLFRRRLIMWFFISVFLQNYWMSSVYGRSWAFMWSAHNVHKWAMFLLVILFYVA 2231

Query: 108  FFV 100
             ++
Sbjct: 2232 IWI 2234


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 219 VFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNT 94
           V+ILQ FL++LF   M    + Y  +   ++   + + F+ T
Sbjct: 69  VYILQIFLFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIAT 110


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 279 IKLFYILFIRNKYILITIIHVFILQYFLYNLFNYIMSTI 163
           I LFY LF  + + + TII   +L  F   +   I S I
Sbjct: 150 ISLFYSLFHAHPFRINTIIPALVLPIFPCMICGVIASAI 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,043,260
Number of Sequences: 5004
Number of extensions: 19034
Number of successful extensions: 66
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)