Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11j13
         (344 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0374 + 4914864-4914947,4915094-4915217,4921146-4921471,492...    28   1.7  
09_02_0051 - 3606453-3606473,3606562-3606957,3608250-3608419,360...    27   3.9  
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938...    27   3.9  
06_01_1166 + 9931955-9933406                                           26   6.9  
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    26   9.1  
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771...    26   9.1  

>04_01_0374 +
           4914864-4914947,4915094-4915217,4921146-4921471,
           4921527-4921658,4921824-4922362,4922445-4922597,
           4922695-4922995
          Length = 552

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +1

Query: 28  RFEDDM--EVLYDGVHPNPLLAIQCINE-KLYDKHYKIRKIAKRVIDVDCTHNVVKEVIQ 198
           R EDD+  + L    HP     I C N    Y   Y+ RK++K   D      +  EVIQ
Sbjct: 47  RREDDILTKALGTKGHPGRTRGIGCYNGLPQYSSQYRKRKVSKEERDACLKAELKVEVIQ 106

Query: 199 EV 204
           E+
Sbjct: 107 EL 108


>09_02_0051 -
           3606453-3606473,3606562-3606957,3608250-3608419,
           3609654-3610707
          Length = 546

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 85  AIQCINEKLYDKHYKIRKIAKRVIDVD 165
           AI+CI E   D+ Y I  + KRVI ++
Sbjct: 422 AIKCIEEHKLDEKYPIDLLQKRVIQLE 448


>02_05_0483 -
           29391929-29392256,29393048-29393148,29393640-29393834,
           29394124-29394240,29394376-29394447,29394840-29394950,
           29395029-29395127,29395991-29396047,29396607-29397008,
           29397249-29397303,29397725-29397809,29398023-29398130,
           29398229-29398295,29398717-29398875,29399277-29399405
          Length = 694

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 189 LFNYIMSTIHVDYTFSYFSNFVMFIVEF-FVNTLNCQQGIWVHTVIEHFHV 40
           L NY      ++Y F +    + F  EF F   +   + +W H   EHFH+
Sbjct: 561 LHNYFRKNDCLNYFFCFRWVLIQFKREFSFDQIMLLWEVLWTHYWSEHFHL 611


>06_01_1166 + 9931955-9933406
          Length = 483

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 124 NVYRRVFR*YIELPTRDLGAHRHRAL 47
           N +RR+   Y+E P  DLG  R RA+
Sbjct: 228 NTFRRLEGQYLERPLADLGFRRVRAI 253


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 201 FLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFF 103
           F    FN I   I V YT     NF  +++EFF
Sbjct: 473 FFGRSFNRIYPLIMVVYTLLVAGNFFGYVLEFF 505


>01_01_0977 -
           7717808-7717837,7718227-7718327,7718449-7718548,
           7718706-7718822,7718913-7718990,7719980-7720058,
           7720184-7720249,7720373-7720441,7720890-7721188
          Length = 312

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 246 KYILITIIHVFILQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIV 112
           KY  +     F + YFL  +FN +   I+  + + YF + +  +V
Sbjct: 110 KYPALITGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLV 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,972,717
Number of Sequences: 37544
Number of extensions: 95813
Number of successful extensions: 316
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)