Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11j12
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    24   3.5  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    24   4.6  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    23   8.0  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    23   8.0  

>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 239 TCFIVFLIHSSRLDDYL-NFLKSHVRQFRHLLN 144
           TCF +FL H+S L  +L   L +    ++ L+N
Sbjct: 638 TCFHIFLNHNSELISFLEGILPNASPNYKTLIN 670


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 23  SLDSPRLDGYVLASSPIPHTDWNEELKLYAQSHGY 127
           SLD  +L   + A  PI   ++  + KLYA  H +
Sbjct: 336 SLDYSQLFSILYALYPINFLEFLRDPKLYASKHNF 370


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 91  IPVGVWYGRRCQNISVQTRR 32
           IPVGV++ R   N+SV+  R
Sbjct: 615 IPVGVFFTRNPHNLSVKKIR 634


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 242 NTCFIVFLIHSSRLDDYL 189
           N C +VF+I S+  D Y+
Sbjct: 338 NACLLVFIISSANSDIYI 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 834,423
Number of Sequences: 5004
Number of extensions: 10440
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)