Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11j08
         (218 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   5.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   5.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   9.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    19   9.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   9.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 142 NSILTTMLKFRSFKNSVPK 86
           N+ILT M      +NS+PK
Sbjct: 269 NTILTFMTLASKVENSLPK 287


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 3   PFMIGISFETNNYLNITK 56
           P  + + F  NNY+N+ +
Sbjct: 616 PDSVELLFINNNYINLVR 633


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 81  MFLGTEFLKLRNFNIVVRMLL 143
           +FL    + +R FN++  MLL
Sbjct: 268 LFLNMASVFMRIFNLICMMLL 288


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 204 FHYFYYVKKPNFD 166
           F Y    K PNFD
Sbjct: 312 FFYCAATKNPNFD 324


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/32 (21%), Positives = 14/32 (43%)
 Frame = -2

Query: 160 FRYDVYNSILTTMLKFRSFKNSVPKNMHKDNY 65
           ++Y  YN+       + ++ N+   N  K  Y
Sbjct: 322 YKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYY 353


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 84  FLGTEFLKLRNFNIVVRMLL 143
           FL    + +R FN++  MLL
Sbjct: 237 FLNMASVFMRIFNLICMMLL 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,201
Number of Sequences: 438
Number of extensions: 947
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3281070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)