Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11j07
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    28   1.4  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   1.9  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    27   2.5  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.3  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   4.3  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   5.7  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   5.7  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    26   5.7  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    26   5.7  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   5.7  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   7.6  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   10.0 

>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 125 NKKKSFMCQLLLCFSLIYSWKRIFNKNTSNKDLSLTHALKIGATFWVI 268
           +K+++    L  CF++ + W RI  K   +KD++L   + I    +++
Sbjct: 59  SKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLL 106


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 200 KNTSNKDLSLTHALKIGATFWVIYVHVVVSVDQISGTSSDTYPNNNVYNVLMTGTLAFDT 379
           KN      SL  AL +  T  VIYV  +  ++ +   S      N+++N L+T TL    
Sbjct: 151 KNNYRLCFSLLFALLVYGT-GVIYVLTIALINYLISKSL----KNSIFNPLLTWTLDISV 205

Query: 380 LFF 388
           +FF
Sbjct: 206 VFF 208


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 111 FAALKLTGRLLRELHCFLYLPHLLQLCIVLSAAKSI 4
           FA  K   R     HCF  L   + LC+V   + ++
Sbjct: 11  FALYKFLQRYFHSFHCFFLLCFTVMLCVVQQCSSAM 46


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 298 LVHGNNYMHINNPKCCSNFQSMCQRQILVRCVLIKYSLPRIY 173
           +V   NY H N     +NFQ  C   IL++ +L   ++  I+
Sbjct: 2   IVSNRNYSHKNFNVTNNNFQVSCFNPILLKIILFLNTIVCIF 43


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 431 SSNKRNDGN*TGHL*RTMCRKLKFQS 354
           SSN  +DGN    L R M R+L F+S
Sbjct: 712 SSNDEDDGNDEDPLSREMSRRLSFES 737


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 511 VGYKTHELQDLTAGSTKVDELLDAVPTLQIKEM 413
           V  KT E QDL+   T     +DAVPT+  K +
Sbjct: 86  VEVKTTEPQDLSTAETAPKVDIDAVPTIDGKNI 118


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 280 YMHINNPKCCSNFQSMCQR 224
           Y  INN K CSN +S C R
Sbjct: 47  YSMINNVKLCSNEKSFCIR 65


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 358 WNFSFRHIVLYKWPV*FPSFLLFEESVQHRGARQLWWSLRSDPAIRVFCNQQDY 519
           WN+   +   + W + F S +  E+  Q    R LW SL     +++   Q+DY
Sbjct: 314 WNYFDANSNAFSWLLRFDSQVRMEQ-FQELLMRALWESLNQQRWLKIDDEQRDY 366


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 223 VFDTCFENWSNILGYLCACSCFRGPDFRN 309
           VF+T  EN   + G  C  + F  PD R+
Sbjct: 79  VFNTTHENVKYLKGIKCPSNVFANPDIRD 107


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 408 ELNRPLVKNNVSKAKVPVINTLYTLLFGYVSLEVPE 301
           E  R + K   +K K    +TLYT  F  +S E+PE
Sbjct: 265 ETKRFIEKALTNKVKNQDEDTLYTFQFSDISSEIPE 300


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 210 DVFLLNILFQEYINEKHNNSWHMKLFFLFVTDGFAALKLTG 88
           +VF+L++   E   + H N +H     + +  G + LK+TG
Sbjct: 181 EVFVLDLDTCELTFQNHLNCYHYPHMLVNIGSGVSILKVTG 221


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 62  KQCNSRNSLPVSFRAANPSVTNKKKSFMCQLLLCFSLIYSWKRIFNKNTS-NKDLSLTHA 238
           K+ N  NSL V     N     KK +      L  SL   WK +   N S +K LSL  +
Sbjct: 152 KELNKGNSLEVRRELGNCLAHLKKGTLNIDNALQASLQKYWKELQYFNVSKDKLLSLEES 211

Query: 239 LKI 247
           +K+
Sbjct: 212 IKL 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,558
Number of Sequences: 5004
Number of extensions: 56257
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)