Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11j07
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378...    30   1.5  
02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638...    28   7.8  

>11_04_0096 +
           13435988-13436803,13436880-13437053,13437673-13437834,
           13438548-13438690,13439059-13439134,13439231-13439403,
           13439482-13439563,13439949-13440026,13440369-13440461,
           13441026-13441187,13441225-13441530,13442265-13442369,
           13443097-13443243
          Length = 838

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 20  DRT-IHSCNRCGKYKKQCNSRNSLPVSFRAANPSVTNKKKS-FMCQLLLCFSLIYSWKRI 193
           DR+ I  C+R G Y+K   S  SL  +F      + N ++S F+ ++L    L +S  ++
Sbjct: 609 DRSLIRLCSRFGDYRKDDPSSFSLHSNFSLFPQFMFNLRRSQFVQEILALLILAFSLSQV 668

Query: 194 FNKN 205
           FN +
Sbjct: 669 FNNS 672


>02_04_0113 -
           19861904-19862197,19862338-19862496,19862580-19863833,
           19864086-19864124
          Length = 581

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 229 DTCFENWSNILGYLCACSCFR-GPDFRNFK 315
           + CF NW+ +LG   ACS F+  P FR  +
Sbjct: 456 EKCFWNWTEVLG---ACSIFQNAPTFRELE 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,248,857
Number of Sequences: 37544
Number of extensions: 374927
Number of successful extensions: 1182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)