Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11j06
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    27   1.6  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    27   2.9  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    27   2.9  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    26   3.8  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    26   5.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   6.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.8  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    25   8.8  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   8.8  

>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 292 IAEIYSYTEHPEYQLNV-KAFEDIMEEFNHP 381
           +AE Y Y E  EYQL+  KA E  +  F+ P
Sbjct: 313 LAEAYEYLEKGEYQLSYDKAKESCLGSFSSP 343


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 259 VYDDCDTQANEIAEIYSYTEHPEYQLNVKAFEDIMEEFNH 378
           V++DCD    EI  +   T+H    ++ K   D   EF H
Sbjct: 216 VFNDCDATQVEINPLAETTDHKVLCMDAKLNFDDNAEFRH 255


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 328 YQLNVKAFEDIMEEFNHPPSWQR---LTKKQ 411
           Y+   KA EDI  ++N  P W +   LTK+Q
Sbjct: 397 YKPYFKALEDIANQYNGKPHWAKEYSLTKEQ 427


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 205 PLEEGDCVNDMESPELDFVYDDCDTQANEIAEIYSYTEHP 324
           P+E  D   D+ES   D    +    A++I + ++Y  HP
Sbjct: 93  PVETSDLNIDVESEVFDLEDINFQNDADDINQRFTYNNHP 132


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +1

Query: 235 MESPELDFVYD--DCDTQANEIAEIYSYTEHPEYQLNVKAFEDIMEEFNHPPSWQRLTKK 408
           ++SP L + +D    D +  ++     Y + P  +L  K  E +      P  WQ   + 
Sbjct: 152 LKSPTLSYPFDLDSLDKRIFKLESKIGYADEPLSELLNKCMEKLEIVEQDPQFWQSRIES 211

Query: 409 QQQTVVMMLLEH 444
            +Q +    L+H
Sbjct: 212 WKQLLAKDFLKH 223


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 505 QGCWAEMQSDAEQGHWARVNIMTLYEMGTFSIF 603
           Q C+ ++ S  E  HW    ++T Y   TF  F
Sbjct: 8   QDCFEKLSSSKEGQHWFCSGLLTQYIQPTFFWF 40


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 403  KKQQQTVVMMLLEHL-DVAISEIRMRAIRCILYLAQGCWAEMQSDAEQGHWARVN 564
            KKQ++ V  ++L  L +   + IR   +  +LYL +       +  E  +W  +N
Sbjct: 1716 KKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHALNPFEANYWVPIN 1770


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 206 PWKKEIALTTWRAPSLTSSTMTVILKPTKL 295
           PW   + +  W+     +S   V+LKP++L
Sbjct: 171 PWNFPLKMALWKLVPAIASGNCVVLKPSEL 200


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 397 LTKKQQQTVVMMLLEHLDVAISEIRMR 477
           + K  + T+  MLLEH+D A+  ++ R
Sbjct: 277 IDKAPKDTISTMLLEHVDKAVQLLQKR 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,605
Number of Sequences: 5004
Number of extensions: 50190
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)