Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11j06
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469...    29   3.0  
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369...    28   5.2  
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452...    27   9.0  

>04_04_0154 -
           23146445-23146535,23146689-23146795,23146933-23146993,
           23147070-23147221,23147306-23147383,23147696-23147809,
           23147880-23147956,23148128-23148194,23148341-23148406,
           23148528-23148651,23148733-23148825,23149446-23149594,
           23149681-23149761,23150502-23150644,23150758-23150872
          Length = 505

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 167 VVAEVLNYRMFAVPWKKEIALTTWRAPSLTSSTMTVILKPTKL 295
           V+ E +       PW   + + TW+     ++  T +LKP++L
Sbjct: 149 VLKEPIGVVGLITPWNYPLLMATWKVAPALAAGCTAVLKPSEL 191


>09_02_0057 -
           3697255-3698116,3698191-3698351,3698442-3698636,
           3698728-3699126,3699208-3699477,3700102-3700695
          Length = 826

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 262 YDDCDTQANEIAEIYSYTEHPEYQLNVKAFEDIMEEFNHPPSWQRLTKKQQQ 417
           YDD   +   + +I  Y EHPE        E   E    PP   +LTKK+Q+
Sbjct: 550 YDDFSMEKVNMEKITIYVEHPE------PLEPPAEPAPPPPQPLKLTKKEQK 595


>10_08_0901 -
           21443224-21444085,21444804-21444998,21445189-21445259,
           21446293-21447094,21447687-21447723,21448270-21449023
          Length = 906

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 170 VAEVLNYRMFAVPWKKEIALTTWRAPSLTSSTMTVILKP 286
           +A + N+R+  +    ++A  T   P+L  +TMT  L+P
Sbjct: 251 LALIANHRLIRLKRSGDVARLTATQPALAQTTMTTTLQP 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,471,744
Number of Sequences: 37544
Number of extensions: 295160
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)