Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11j06
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    25   0.59 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.5  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 503 PKGAGQKCNRMPNKDIGLE*TL*HYMKWEHFQYLW 607
           P+     CNR  ++ IG+  TL  +M+ +++ Y W
Sbjct: 58  PEVLNNHCNRCTSRQIGIANTLIPFMQ-QNYPYEW 91


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 298 EIYSYTEHPEYQLNVKAFEDIMEEFNHP 381
           +IY++ + PE    V+ F D+++EF  P
Sbjct: 254 KIYTH-DIPETYNVVRKFRDVLDEFPQP 280


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 298 EIYSYTEHPEYQLNVKAFEDIMEEFNHP 381
           +IY++ + PE    V+ F D+++EF  P
Sbjct: 254 KIYTH-DIPETYNVVRKFRDVLDEFPQP 280


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 312 VTIYFSNFVGLSITVIVDEVKLGALHVVNAIS 217
           VT+ FS  VG            GA+ +VN ++
Sbjct: 410 VTLLFSGIVGFGAYCAAHTDSSGAMKIVNMLN 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,491
Number of Sequences: 438
Number of extensions: 3977
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)