Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11j05
         (234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.062
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    26   0.77 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   1.3  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   1.8  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    24   3.1  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    23   4.1  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    23   4.1  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    23   5.4  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    23   7.1  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    22   9.4  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    22   9.4  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    22   9.4  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 29.5 bits (63), Expect = 0.062
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 41  VHGLSICQIMLYGYIVCFSYEFYYCYGFRMF 133
           VHGL  C ++LY Y  C S+ +YY Y +  F
Sbjct: 618 VHGL--CWVLLYYYQGCPSWTWYYPYHYAPF 646


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 3   LELLILLGHTMGAYTDYRYA 62
           +E +IL+GH+MG Y    YA
Sbjct: 171 IEKMILVGHSMGGYLSAVYA 190


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 232  FFLF---FKDHTVAIIMYKAHINELNIKLLSTSFVFKHSKPIT 113
            FFL    FKD+ +  + Y   ++ L + L +  + ++HS PIT
Sbjct: 1730 FFLLLMDFKDNDLVGVGYLRILSCLLVSLPAMVYTYEHSDPIT 1772


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 135 KTKLVDSSLMFNSFMCALYIMIATVWSLKNKKK 233
           KT L++   ++ +  C L  + AT W + N KK
Sbjct: 622 KTDLIELERLWLTRECILRYLRATKWHVSNAKK 654


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 199 IIMYKAHINELNIKLLSTSFVFKHSKPITIVKLI 98
           I+ +KAH+N +NIK       F   +    +K++
Sbjct: 182 ILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMV 215


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 24  GHTMGAYTDYRYAKSCYMVILFVSVMSFTIVM 119
           GH M   TD  YA+ C   ++++   + T V+
Sbjct: 113 GHEMIFTTDDAYAEKCNDKVMYIDYKNITKVI 144


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 178 INELNIKLLSTSFVFKHSKPITIVKL 101
           I  +++ L   S V+KHS P+T ++L
Sbjct: 281 IRFMSLDLTKLSQVYKHSLPVTDMQL 306


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 62  QIMLYGYIVCFSYEFY 109
           Q + Y  ++CFSY +Y
Sbjct: 216 QNLYYDLLLCFSYSYY 231


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -3

Query: 178 INELNIKLLSTSFVFKHSKPITIVKLITETNNITI*H 68
           +NE +  L+  S+ FKH   + +   +   N++ + H
Sbjct: 2   LNERDFDLIFDSYDFKHEGKVHLSNFLPIINDLQLLH 38


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 232 FFLFFKDHTVAIIMYKAHINELNIKLLSTSF 140
           FF FF+     +   +  I  LN+  LS+S+
Sbjct: 41  FFCFFRKRWKVLYAPRTTIEGLNLPTLSSSY 71


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
            Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 12   LILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTI--VMG-LECLKTKLVDSSLMFNSFMC 182
            LIL    +  +   R+  + YM  +F S+++FT    MG +  + TK++  S + N    
Sbjct: 861  LILAIVLIQVFDGMRFINNGYMKYIFWSIVAFTAWKTMGAVTFIATKII--SRIANCVKS 918

Query: 183  ALYI 194
             LYI
Sbjct: 919  KLYI 922


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 145 SFVFKHSKPITI 110
           SF+FK +KP+T+
Sbjct: 118 SFLFKQNKPLTV 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 886,472
Number of Sequences: 5004
Number of extensions: 13806
Number of successful extensions: 40
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)