Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11i24
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 226 2e-60
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 167 1e-42
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 154 1e-38
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 148 6e-37
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 144 1e-35
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 129 3e-31
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 117 2e-27
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 108 6e-25
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 60 2e-10
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 27 1.8
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 27 3.1
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 26 5.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.3
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.3
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 226 bits (553), Expect = 2e-60
Identities = 105/165 (63%), Positives = 140/165 (84%)
Frame = +3
Query: 159 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSV 338
++D+ KP ++RLSNI AA++VADAIRTSLGP+GMDKMIQ GEV +TNDGATILK +SV
Sbjct: 11 FQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV 70
Query: 339 IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQL 518
+HPAAKMLV+LS AQD+EAGDGTTSVV++AG++L AEKLL+KGIHPTVI++ FQ+A
Sbjct: 71 LHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGF 130
Query: 519 ALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAV 653
+ ++ + ++L++ ++LL+AA TSLNSK+VSQ+S +LAPIAV
Sbjct: 131 TVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAV 175
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 167 bits (406), Expect = 1e-42
Identities = 86/155 (55%), Positives = 117/155 (75%), Gaps = 2/155 (1%)
Frame = +3
Query: 195 SNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELS 374
S+I A K VA+ +RTSLGPRG+DK++ + +GE+T+TNDGATIL QM V H AK+LV+LS
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLS 97
Query: 375 RAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPV 554
++QD E GDGTT VVV+AGALL+ AE L+ KGIHP I+DG++KA Q+A++ ++ +S V
Sbjct: 98 KSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVV 157
Query: 555 DLNNEDA--LLKAAATSLNSKVVSQHSTILAPIAV 653
D + E+ L ++A TSL SKVVS+ A IAV
Sbjct: 158 DFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAV 192
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 154 bits (373), Expect = 1e-38
Identities = 79/167 (47%), Positives = 112/167 (67%), Gaps = 4/167 (2%)
Frame = +3
Query: 165 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIH 344
D S+ LSNINA AV D IRT+LGP G DK++ GEV I+NDGATI+K + ++H
Sbjct: 18 DDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVH 77
Query: 345 PAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLAL 524
PAAK LV+++RAQD E GDGTTSVVV AG LL A ++ G+ +I G++KA QLA+
Sbjct: 78 PAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAV 137
Query: 525 QVVENMSTPVDLNNE----DALLKAAATSLNSKVVSQHSTILAPIAV 653
++ ++ +DL++E D L K A+T++NSK++ +ST + V
Sbjct: 138 NKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVV 184
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 148 bits (359), Expect = 6e-37
Identities = 69/156 (44%), Positives = 110/156 (70%)
Frame = +3
Query: 189 RLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVE 368
++SNI AAKAVAD IRT LGPR M KM+ G V +TNDG IL+++ V HPAAK ++E
Sbjct: 21 QMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIE 80
Query: 369 LSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMST 548
L+R QD E GDGTTSV+++AG +L +A LL + IHP V+ F++AL+ AL +++ ++
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITL 140
Query: 549 PVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQ 656
PV++++ + + T + +K+V++ S ++ +A++
Sbjct: 141 PVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALR 176
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 144 bits (348), Expect = 1e-35
Identities = 72/164 (43%), Positives = 111/164 (67%), Gaps = 1/164 (0%)
Frame = +3
Query: 165 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIH 344
+K D+R N+ A A+A+ +++SLGP G+DKM+ G+VT+TNDGATIL + V H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 345 PAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLAL 524
PA K+LVEL++ QD E GDGTTSVV+IA LL A +L++ IHPT I G++ A++ A+
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 525 Q-VVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAV 653
+ + + +S VD +++L+ A TS++SK++ S + +AV
Sbjct: 135 KFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFSTMAV 178
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 129 bits (312), Expect = 3e-31
Identities = 70/161 (43%), Positives = 107/161 (66%), Gaps = 6/161 (3%)
Frame = +3
Query: 189 RLSNINAAKAVADAIRTSLGPRGMDKMIQA-ANGEVTITNDGATILKQMSVIHPAAKMLV 365
RLS+ A AV D ++++LGP+GMDK++Q+ ++G++ +TNDGATILK +++ + AAK+LV
Sbjct: 22 RLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLV 81
Query: 366 ELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQV----- 530
+S+ QD E GDGTTSV V A LL AE ++ IHP VI DG++ A + A+
Sbjct: 82 NISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASS 141
Query: 531 VENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAV 653
++N S P ++ L A T+L+SK++SQ+ A +AV
Sbjct: 142 IDNSSDPAKFRSD--LENIARTTLSSKILSQNKNHFAQLAV 180
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 117 bits (281), Expect = 2e-27
Identities = 59/152 (38%), Positives = 93/152 (61%)
Frame = +3
Query: 198 NINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVELSR 377
NI+AA + D ++++LGP G KM+ G + +T DG +L +M + +P A + + +
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAAT 80
Query: 378 AQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVD 557
AQD GDGTTSV ++ G LL AE +++G+HP++ISDGF A AL +++ T +
Sbjct: 81 AQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFE 140
Query: 558 LNNEDALLKAAATSLNSKVVSQHSTILAPIAV 653
++ E LL A TSL++K+ S+ LAP V
Sbjct: 141 VDRE-VLLNVAKTSLSTKISSKVVESLAPAVV 171
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 108 bits (260), Expect = 6e-25
Identities = 58/170 (34%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Frame = +3
Query: 108 IMAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANG 287
+ PKA G + Y+ D + N NA + +++ RTSLGP G +K++
Sbjct: 3 LRVPKASGPQLFREG--YRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQ 60
Query: 288 EVTITNDGATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQK 467
+ +TND ATI++++ VIHPAAK++V+ ++ Q+ E GD VVV G LL AE +++
Sbjct: 61 QTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRM 120
Query: 468 GIHPTVISDGFQKALQLALQVVENMSTP--VDLNNEDALLKAAATSLNSK 611
G+ P I+ G++ AL ++V+E + + +E L+KA T ++SK
Sbjct: 121 GLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKAIRTCISSK 170
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 60.5 bits (140), Expect = 2e-10
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 5/176 (2%)
Frame = +3
Query: 93 RLNINIMAPKAGGD-AIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKM 269
RL + I + G A+ + KD D R S + +A A+ +LGP+G + +
Sbjct: 11 RLPLRIAGRRIPGRFAVPQVRTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVL 70
Query: 270 IQAANGEVTITNDGATILKQMSV----IHPAAKMLVELSRAQDIEAGDGTTSVVVIAGAL 437
I G IT DG T+ + +S+ + A+++ +++ + AGDGTT+ V+ A+
Sbjct: 71 IDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAI 130
Query: 438 LDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVDLNNEDALLKAAATSLN 605
+ + G +P + G Q A+ ++ ++ + D+ + + + A S N
Sbjct: 131 FSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQ--ANKRDITTSEEISQVATISAN 184
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 332 ECYSSSCKNVGRIISCSRY*SW*WNNISSCYCWCVVGF 445
EC S K+ ++I+C R+ S+ N I S Y +GF
Sbjct: 87 ECLLSGGKSFAKVINCLRFPSFLINFIFSVYQTSALGF 124
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 590 CNITKFQSSFTTLNYFGT 643
CNI KF SSF T N F T
Sbjct: 276 CNIPKFNSSFKTSNDFFT 293
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +3
Query: 456 LLQKGIHPTVISDGFQ--KALQLALQVVENMSTPVDL---NNEDALL 581
+L +G ++ D Q K + AL+V++NM T VDL N ALL
Sbjct: 375 ILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKASALL 421
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 7.3
Identities = 29/116 (25%), Positives = 43/116 (37%)
Frame = +3
Query: 171 SKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPA 350
+K D + A AD + TS M + + ANG+ + S HPA
Sbjct: 1859 TKNRDSLYQKLVARAPGADVLSTSHFATSMSRDLGKANGKSNFLSSKLANALSFSTTHPA 1918
Query: 351 AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQL 518
K ++I + V +AG + L Q + P VI+D K L L
Sbjct: 1919 TKRW----ERREISNFNYLQIVNTLAGRTYND---LTQYPVFPWVIADYTSKELDL 1967
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 452 LSRIQQRTSNNNY*CCSITSFNI 384
LS Q TS NN+ C SI +F I
Sbjct: 177 LSNRQLNTSENNWTCLSIENFGI 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,640
Number of Sequences: 5004
Number of extensions: 48446
Number of successful extensions: 147
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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