Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11i21
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.8  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 550 IYLPQHKKNILLYGIIKKNNITMR*FPSDSYNCYK**ESNDP 675
           + L Q  KNI LYG+ K  N+ ++ +  D   C    ES +P
Sbjct: 84  VTLRQEYKNIKLYGLTK--NLEIKNYNIDWDKCILSSESYNP 123


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/40 (20%), Positives = 21/40 (52%)
 Frame = -1

Query: 666 GFLLFITIVRIRRKLSHRYVVFFYYTIE*NVFFMLWQIDK 547
           GFL   ++  + + + ++     Y T + N++ + W +D+
Sbjct: 8   GFLFLASLCLLVQAVPNKVADKTYVTRQKNIYELFWHVDQ 47


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/40 (20%), Positives = 21/40 (52%)
 Frame = -1

Query: 666 GFLLFITIVRIRRKLSHRYVVFFYYTIE*NVFFMLWQIDK 547
           GFL   ++  + + + ++     Y T + N++ + W +D+
Sbjct: 8   GFLFLASLCLLVQAVPNKVADKTYVTRQKNIYELFWHVDQ 47


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 620 DSFRRILTIVINSKNPTIRLIRRALNRKYIL 712
           ++ + I ++ I    P + +  R +NR+YIL
Sbjct: 349 ETLQMIASMKIKEALPHVPIFDRYINREYIL 379


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 620 DSFRRILTIVINSKNPTIRLIRRALNRKYIL 712
           ++ + I ++ I    P + +  R +NR+YIL
Sbjct: 349 ETLQMIASMKIKEALPHVPIFDRYINREYIL 379


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 620 DSFRRILTIVINSKNPTIRLIRRALNRKYIL 712
           ++ + I ++ I    P + +  R +NR+YIL
Sbjct: 349 ETLQMIASMKIKEALPHVPIFDRYINREYIL 379


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 337 LAHLDCTKRKLSRSLF 384
           L  LDC+ RKL+  LF
Sbjct: 77  LEDLDCSLRKLNSRLF 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,811
Number of Sequences: 438
Number of extensions: 4218
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)