Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11i06
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   1.9  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.5  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    25   4.3  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   4.3  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    24   7.6  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    24   10.0 
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   10.0 
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    24   10.0 

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 43  NASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSK 174
           + S +  N++N+ +  +   P+ TN++     D + + S  KSK
Sbjct: 53  STSSYSGNHHNINIQHHPNRPFRTNSSSFSPNDYSISESPSKSK 96


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = +1

Query: 1   DTMERYHPYQRAPWNASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSKAR 180
           DT   Y   Q     +S    NY NVK+ +          A + +  TTNA  +P  K  
Sbjct: 47  DTTSTYEGAQPLSSQSSR-SSNYTNVKITATQNNVDALTGAPIRIVTTTNARIQPDEKTL 105

Query: 181 RRL 189
           + L
Sbjct: 106 QDL 108


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 257 HSKGFAKLPSSIQHGCGAMLVKSNLLLALD-FGRE-GAFVVSVISTSALFV 111
           H+KGF  LPS + + C   L +   +  ++  G E  A  VSV+     FV
Sbjct: 219 HTKGFLNLPSGVWYLCFNTLAQYFCVRGVNALGAETSALTVSVVLNVRKFV 269


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +1

Query: 19  HPYQRAPWNASIFKKNYNNVK-VASYIEVPYTTNNA-DVEMTDTT-NAPSRPKSKARRRL 189
           H Y+        F  + +N++ + S I VP   ++  D+E  D   + P RP S A +  
Sbjct: 223 HRYKSQHHRLRQFYADCSNLRYLTSLISVPRLPHDPPDLEGDDNIPDLPKRPASIAPQPT 282

Query: 190 DFTNMAPQP 216
             + +APQP
Sbjct: 283 GASTIAPQP 291


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 147 CCVSHFDVCI 118
           CC+ H+D+CI
Sbjct: 155 CCLKHYDLCI 164


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 197 PTWRRSRVVLTTAILQNLYC 256
           P+W+ S  VL   IL  L+C
Sbjct: 909 PSWQLSGAVLVVDILATLFC 928


>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 79  KVASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRLDF 195
           K+A  ++   +++N      +  +  S P SKAR+  DF
Sbjct: 4   KIADLLQELQSSSNVTSNQLENVDKSSIPLSKARKPSDF 42


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 194 LPTWRRSRVVLTTAILQNLYC 256
           +P+W+ S  VL   IL  ++C
Sbjct: 820 IPSWQLSGAVLAVDILATMFC 840


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,172,428
Number of Sequences: 5004
Number of extensions: 20870
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)