Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11i06
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0717 + 35702592-35703152,35703789-35704121                       28   2.4  
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748...    27   4.1  
05_04_0077 - 17712043-17712246,17712487-17712522,17712746-177129...    27   7.2  
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355...    26   9.5  
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994...    26   9.5  
02_04_0094 + 19664434-19665078                                         26   9.5  

>03_06_0717 + 35702592-35703152,35703789-35704121
          Length = 297

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 183 SPCFRFWARGRICCVSHFDVCIICCVRYFNV 91
           S C R W RGR+   SHF      C+R  +V
Sbjct: 114 SECKRGWLRGRVTHSSHFWASTSACLRRSHV 144


>04_04_1477 +
           33873976-33874080,33874433-33874544,33874777-33874874,
           33875548-33876261,33876348-33876518,33876955-33877011,
           33877096-33878718
          Length = 959

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 1   DTMERYHPYQRAPWNASIF--KKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSK 174
           DTM+ Y   Q +      F  +K+ N    A+ ++    T+N  V  +++ +  ++PK  
Sbjct: 590 DTMDAYKTEQTSEMEGKKFMARKSCNPAFAAAQLKFEELTSNLTVSRSNSLDGANKPKVH 649

Query: 175 ARRRLDFTNMAPQ 213
             R  D  N++P+
Sbjct: 650 TPRSQD--NVSPK 660


>05_04_0077 -
           17712043-17712246,17712487-17712522,17712746-17712900,
           17713431-17713591,17713950-17714110,17714188-17715657,
           17715704-17715998,17716461-17717737,17717826-17718137,
           17718223-17718356,17718449-17718521,17719994-17720059,
           17720748-17720936
          Length = 1510

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 124 DVEMTDTTNAPSRPKSKARRRLDFTNMAPQPCCIDDG 234
           DV+  ++ N    PK KA+ ++     A     +DDG
Sbjct: 418 DVKAANSANDDKHPKGKAKLKVTLVRNAKMESSLDDG 454


>06_01_0497 +
           3555919-3557154,3557815-3558143,3558177-3558775,
           3558919-3560393
          Length = 1212

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 251 KGFAKLPSSIQHGCGAMLVK 192
           +GF K+ SSIQ   GAM VK
Sbjct: 6   EGFGKMLSSIQEAIGAMSVK 25


>05_04_0339 +
           20397591-20397627,20398494-20398526,20399210-20399438,
           20402055-20402184,20402251-20402532
          Length = 236

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 139 DTTNAPSRPKSKARRRLDFTNMAPQP 216
           ++TN P++P SK + R +  + AP+P
Sbjct: 131 NSTNKPNKPSSKMQPRPESHSKAPKP 156


>02_04_0094 + 19664434-19665078
          Length = 214

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +1

Query: 97  EVPYTTNNADVEMTDTTNAPSRPKSKARRRLDFTNMAPQPCCIDDGNFAK 246
           ++ ++   A +E  D+T   S PKS A         A  P C   G  AK
Sbjct: 66  DIDWSEVGAVLEREDSTKGASNPKSAAACSCAGAPAARMPTCAGGGGTAK 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,292,530
Number of Sequences: 37544
Number of extensions: 124317
Number of successful extensions: 324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)