Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11i02
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    26   4.9  
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz...    26   6.5  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   8.6  

>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 316 TGKILGIVKKVGLDETII*TPKKWGVVDLV 227
           TGK LGIV   G ++ +I  P   G+VD+V
Sbjct: 82  TGKSLGIVVVSGRNKGLIKNPFLGGLVDIV 111


>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 263 NNRLVEPYLLDNTQDFSGGKQPV*SRISEN 352
           N     P LLDN QDF   K+P  + IS++
Sbjct: 70  NENFRNPKLLDNLQDFLDIKEPRGTMISKD 99


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 361 TEIDSQDTWTGVWHT 405
           +  D +D W GVW+T
Sbjct: 72  SNFDEEDNWNGVWNT 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,448
Number of Sequences: 5004
Number of extensions: 66182
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)