Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11i02
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733...    29   5.2  
04_01_0067 - 673381-673387,675388-678131                               28   6.8  
12_01_1105 + 11672118-11673245                                         28   9.0  

>03_03_0116 -
           14572258-14572881,14573026-14573127,14573253-14573345,
           14573445-14573591,14573690-14573780,14573873-14573961,
           14574061-14574126,14574241-14574762
          Length = 577

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 112 YFDTTHLYLRAKKPFFVILSCGAWKKRGARGRC 14
           Y+  T L+  +K+PFF  L  G  K+    G+C
Sbjct: 209 YYYDTWLHCESKQPFFYWLDVGEGKEINLEGKC 241


>04_01_0067 - 673381-673387,675388-678131
          Length = 916

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 377 WESISVARGFQKFGITLAVFHRKNPGY 297
           W S+S + GF K  IT  +    NP Y
Sbjct: 244 WASVSTSGGFHKIDITEQILRSANPTY 270


>12_01_1105 + 11672118-11673245
          Length = 375

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 423 CQDASIGVPHACPGVLGVDLGSTWFSEIRDY--TGCFP 316
           C+D   G+P++CP    +D+ +T+ +    +  T  FP
Sbjct: 326 CEDHDDGIPYSCPTTNTMDIATTYNAGFSQFAPTSLFP 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,968,967
Number of Sequences: 37544
Number of extensions: 414731
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)