Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11i02
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    30   2.0  
X52810-1|CAB57215.1|   67|Caenorhabditis elegans protein ( Caeno...    29   3.5  
U55376-2|AAA98004.1|  132|Caenorhabditis elegans C.elegans homeo...    29   3.5  
AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm rec...    29   3.5  
U56860-2|AAA98706.3|  225|Caenorhabditis elegans Defective phary...    29   4.6  
AY766389-1|AAV34757.1|  170|Caenorhabditis elegans PHA-2 protein.      29   4.6  
AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical ...    29   4.6  
X52811-1|CAB57217.1|   60|Caenorhabditis elegans protein ( Caeno...    28   6.1  
U49944-3|AAM51525.1|  341|Caenorhabditis elegans Mesodermal line...    28   6.1  
AC024847-9|AAR30201.1|  147|Caenorhabditis elegans C.elegans hom...    28   6.1  
AC024831-11|ABQ13053.1|  361|Caenorhabditis elegans Hypothetical...    28   8.0  
AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical...    28   8.0  

>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 398  HTPVQVSWESISVARGFQKFGITLAVFHRKNPGYCQ 291
            H P  V+W   SV++ F   G+  AV H  N G CQ
Sbjct: 3338 HRPDSVAW-LWSVSKDFGLPGLKFAVIHTTNEGLCQ 3372


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 398  HTPVQVSWESISVARGFQKFGITLAVFHRKNPGYCQ 291
            H P  V+W   SV++ F   G+  AV H  N G CQ
Sbjct: 3338 HRPDSVAW-LWSVSKDFGLPGLKFAVIHTTNEGLCQ 3372


>X52810-1|CAB57215.1|   67|Caenorhabditis elegans protein (
           Caenorhabditis elegansceh-1 gene, unknown homeobox. ).
          Length = 67

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 93  KCVVSKYASQ*EEHNRENRLEISESERKLWFKN 191
           K   S+Y S  E  N   +L++SE++ K+WF+N
Sbjct: 19  KFKTSRYLSVVERLNLAIQLQLSETQVKIWFQN 51


>U55376-2|AAA98004.1|  132|Caenorhabditis elegans C.elegans homeobox
           protein 1 protein.
          Length = 132

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 93  KCVVSKYASQ*EEHNRENRLEISESERKLWFKN 191
           K   S+Y S  E  N   +L++SE++ K+WF+N
Sbjct: 19  KFKTSRYLSVVERLNLAIQLQLSETQVKIWFQN 51


>AF026209-11|AAB71282.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 262 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 619 KKSKNLENLILRGLLYNNKIKNGGLSIYFSWK 524
           K   NLE+L   G  +  K++N     YFSWK
Sbjct: 170 KNQTNLEDLYYMGPFFWPKLENSITETYFSWK 201


>U56860-2|AAA98706.3|  225|Caenorhabditis elegans Defective pharynx
           development protein2 protein.
          Length = 225

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 24  RAPRFFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 191
           ++P+     Q++ T     A  +K    KY S  E       L +SE + K WF+N
Sbjct: 130 KSPQKRKGGQIRFTNEQTDALEHKFDSHKYLSPQERKKLAKSLSLSERQVKTWFQN 185


>AY766389-1|AAV34757.1|  170|Caenorhabditis elegans PHA-2 protein.
          Length = 170

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 24  RAPRFFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 191
           ++P+     Q++ T     A  +K    KY S  E       L +SE + K WF+N
Sbjct: 75  KSPQKRKGGQIRFTNEQTDALEHKFDSHKYLSPQERKKLAKSLSLSERQVKTWFQN 130


>AF067948-5|AAC17698.2|  243|Caenorhabditis elegans Hypothetical
           protein T27C4.1 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 679 ILN*LFSTLFKIIFLINYTSKKSKNLENLILRGLLYNNKIKNGGLSI 539
           I+  LF     +   I YT ++ +N+E  I R +LY +  +NGGL +
Sbjct: 88  IIGLLFLIAGAVTICIGYTWREERNIEQSIERFVLYQD--ENGGLYV 132


>X52811-1|CAB57217.1|   60|Caenorhabditis elegans protein (
           Caenorhabditis elegansceh-9 gene, unknown homeobox. ).
          Length = 60

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 108 KYASQ*EEHNRENRLEISESERKLWFKN 191
           KY S  +      RL+++E++ K+WF+N
Sbjct: 24  KYLSSSDRSELAKRLDVTETQVKIWFQN 51


>U49944-3|AAM51525.1|  341|Caenorhabditis elegans Mesodermal lineage
           specificationprotein 2 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 108 KYASQ*EEHNRENRLEISESERKLWFKN 191
           +Y S  E  N   +L ++E++ K+WF+N
Sbjct: 224 RYLSSQERSNLAQKLHLTETQVKIWFQN 251


>AC024847-9|AAR30201.1|  147|Caenorhabditis elegans C.elegans
           homeobox protein 9 protein.
          Length = 147

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 108 KYASQ*EEHNRENRLEISESERKLWFKN 191
           KY S  +      RL+++E++ K+WF+N
Sbjct: 93  KYLSSSDRSELAKRLDVTETQVKIWFQN 120


>AC024831-11|ABQ13053.1|  361|Caenorhabditis elegans Hypothetical
           protein Y55F3C.3b protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 451 DDPGVKRFALPRRFYWCATRLS 386
           D+PG K  ++P  F+WC   ++
Sbjct: 279 DEPGTKFTSIPATFWWCVVTMA 300


>AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical
           protein Y55F3C.3a protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 451 DDPGVKRFALPRRFYWCATRLS 386
           D+PG K  ++P  F+WC   ++
Sbjct: 439 DEPGTKFTSIPATFWWCVVTMA 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,445,421
Number of Sequences: 27780
Number of extensions: 382071
Number of successful extensions: 864
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)