Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11i02
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.57 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.99 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.99 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   1.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   1.7  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.3  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    23   3.0  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   5.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   5.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.2  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +3

Query: 9   WQQRP--RAPRFFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLW 182
           W +R   RA   F   QL   +N F   RY  V        E  N    L ++E++ K+W
Sbjct: 3   WDRREARRARTAFTYEQLVALENKFKTTRYLSVC-------ERLNLALSLSLTETQVKIW 55

Query: 183 FKN 191
           F+N
Sbjct: 56  FQN 58


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 428 RLAKTLLLVCHTPVQVSWESISVARGFQKFGITLAVFHRKNPGYCQEG 285
           RLA  ++ +    VQ+  E + +  G     +   V   + P YC  G
Sbjct: 488 RLALDMMDLAADEVQIDGEPVKITIGIHSGEVVTGVIGHRMPRYCLFG 535


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -3

Query: 428 RLAKTLLLVCHTPVQVSWESISVARGFQKFGITLAVFHRKNPGYCQEG 285
           RLA  ++ +    VQ+  E + +  G     +   V   + P YC  G
Sbjct: 488 RLALDMMDLAADEVQIDGEPVKITIGIHSGEVVTGVIGHRMPRYCLFG 535


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 530 AKVNRQPPVFYFVIIK 577
           AKVNRQP  FY+   K
Sbjct: 429 AKVNRQPVWFYYYTYK 444


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 530 AKVNRQPPVFYFVIIK 577
           AKVNRQP  FY+   K
Sbjct: 429 AKVNRQPVWFYYYTYK 444


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 12  QQRPRAPRFFHAPQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 191
           ++RPR    F A QL   K  F   RY        ++         L ++E++ K+WF+N
Sbjct: 20  EKRPRTA--FSAEQLARLKREFAENRY-------LTERRRQQLSRDLGLTEAQIKIWFQN 70


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 48  PQLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 191
           P+   T     +   K    +Y +  E     + L ++E++ K+WF+N
Sbjct: 12  PRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQN 59


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +3

Query: 105 SKYASQ*EEHNRENRLEISESERKLWFKN 191
           ++Y ++         L ++E++ K+WF+N
Sbjct: 42  NRYLTERRRQQLSRDLGLNEAQIKIWFQN 70


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 622 SKKSKNLENLILRGLLYNNKIKNGGLSIYFS 530
           SK+SK + +L  + +  NN  KN    +Y++
Sbjct: 309 SKESKIISSLSNKTIHNNNNYKNYNKKLYYN 339


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 348 SEIRDYTGCFPPEK 307
           +E  D TGC PPE+
Sbjct: 12  TEDYDMTGCGPPEE 25


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 348 SEIRDYTGCFPPEK 307
           +E  D TGC PPE+
Sbjct: 12  TEDYDMTGCGPPEE 25


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 348 SEIRDYTGCFPPEK 307
           +E  D TGC PPE+
Sbjct: 12  TEDYDMTGCGPPEE 25


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 335  SRISENHVLPRSTPRTPGQACGTPIEASWQGESFDTWIIEI 457
            ++I  +   P  + RT GQA G P  A++   +  T ++ +
Sbjct: 1479 NKIGSSPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLRL 1519


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 335  SRISENHVLPRSTPRTPGQACGTPIEASWQGESFDTWIIEI 457
            ++I  +   P  + RT GQA G P  A++   +  T ++ +
Sbjct: 1475 NKIGSSPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLRL 1515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,890
Number of Sequences: 438
Number of extensions: 4987
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)