Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11h19
         (218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   0.44 
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    23   4.1  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         22   9.6  

>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +3

Query: 18 CVGRY-WQGSGLLPCYPLY 71
          C+ R+ W+G+  L CYPLY
Sbjct: 16 CLERFQWRGAIFLVCYPLY 34


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 69  RAGSREADRIP-ASTGPRSSYGPP 1
           R+G R++ R P  ST P+SS+ PP
Sbjct: 141 RSG-RQSPRTPIGSTTPKSSHSPP 163


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 1   GRSVATAWAGTGRDPVCF 54
           GRS+   W   GR+P+ F
Sbjct: 386 GRSLTPNWITWGREPLLF 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,657
Number of Sequences: 5004
Number of extensions: 6810
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)