Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11h11
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 67 2e-12
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 4e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 2e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 9e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 9e-05
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 6e-04
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.004
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.006
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.008
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.008
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 34 0.023
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.030
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 33 0.053
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 32 0.093
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.28
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 29 0.50
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.50
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.66
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.87
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.1
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 1.5
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.5
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 3.5
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 3.5
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.5
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 25 8.1
SPAC19D5.11c |ctf8||DNA replication factor C complex subunit Ctf... 25 8.1
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 67.3 bits (157), Expect = 2e-12
Identities = 34/86 (39%), Positives = 56/86 (65%)
Frame = +1
Query: 97 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLED 276
P+PSEPP+ A+VGNL + + D+ F + + ++RLV+D T++ +GF YVEFE +
Sbjct: 87 PIPSEPPFTAHVGNLSFDLTENDLGDFFGE-GVTSIRLVIDPLTERSRGFGYVEFETADT 145
Query: 277 LMKAIDLNGIINVDGNILKIDVAEEK 354
L A+ L+G ++ G ++I VAE +
Sbjct: 146 LSAALALSG-EDLMGRPVRITVAEPR 170
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +1
Query: 106 SEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLM 282
SEP +VGNL + D++ F I+++RL D ++ + KGF YV F ++
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 283 KAIDLNG 303
K +++NG
Sbjct: 422 KCVEMNG 428
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 303
+VG L + + + F + +I R++MD ++ + KG+ YV+FE E A+ NG
Sbjct: 266 FVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANG 325
Query: 304 IINVDGNILKIDVAEEK 354
+DG ++ +D++ +
Sbjct: 326 TKEIDGRMVNLDLSNPR 342
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.0 bits (99), Expect = 2e-05
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 97 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLE 273
P+P + +VGNL + + R F D SI VR+V D +T+ KGF Y++F+
Sbjct: 263 PMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTM 322
Query: 274 DLMKAIDLNGIINVDGNILKI 336
+ KA+ LN +G L+I
Sbjct: 323 GVDKALLLNEKKMPEGRTLRI 343
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 109 EPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 285
EP +VGNL D+ F + I+ VRL+ ++T K KGF +V+F ++ MK
Sbjct: 225 EPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMK 284
Query: 286 AIDL 297
A++L
Sbjct: 285 AMEL 288
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.9 bits (94), Expect = 9e-05
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIFPDLSIK-NVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 303
Y+GNL + + DI +F + ++ LV DKET K KGF ++++E + A+D
Sbjct: 34 YIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMT 93
Query: 304 IINVDGNILKID 339
+ + ++++D
Sbjct: 94 NVKLLDRLVRVD 105
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 39.1 bits (87), Expect = 6e-04
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 103 PSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDL 279
P EP V NL + + I IF I ++ + + K+++ KG+CY+E+ Y +
Sbjct: 94 PEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQA 153
Query: 280 MKAIDLNGIINVDGNILKIDV 342
A+D +DG L + +
Sbjct: 154 ANAVDKMNNAELDGEELFVSI 174
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 97 PLPSEPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLE 273
P S Y V + + + +F D +KN+ L +D+ T KG+ +E+ LE
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLE 62
Query: 274 DLMKAIDLNGIINVDGNILKIDVA 345
KA+D + +D L++D A
Sbjct: 63 QAQKAVDEKNLSLLDEK-LEVDFA 85
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 121 KAYVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKA 288
+ ++ NL + D+ +F P ++ V + +DK+T+ KGF Y++F +D ++A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEF 261
+VGN+P + + + IF + +K +LV+D ET KG+ + EF
Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.5 bits (78), Expect = 0.008
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 303
YVGN+ + ++ F S+ V ++ DK T KGF Y+EF + A+ LNG
Sbjct: 58 YVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNG 117
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 294
YVG L + + + +F + + ++R+ D T + G+ YV F +ED KA+D
Sbjct: 83 YVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Score = 30.7 bits (66), Expect = 0.21
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 303
Y+ NL + I + + + +F I ++ LV D + DK +GF +V + E KA+D
Sbjct: 264 YIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 304 IINVDGNILKIDVAEEK 354
G L + A++K
Sbjct: 323 DKEYKGKKLYVGRAQKK 339
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 109 EPPYKAYVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMK 285
E K +VG +P + + F + + L+MDK+T + +GF +V +E E ++
Sbjct: 244 EKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVE 302
Query: 286 AIDLNGIINVDGNILKIDVAEEK 354
A I + G +++ A K
Sbjct: 303 ATMSQPYITIHGKPVEVKRATPK 325
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.030
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID-LN 300
YVGNLP ++ +F D+ S+ R+ + T + KGF V+FE D +I+ LN
Sbjct: 283 YVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKLN 341
Query: 301 G 303
G
Sbjct: 342 G 342
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 32.7 bits (71), Expect = 0.053
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 303
YVGNL + I +F I+ + + +D+ T GFC+VE+ +D + ++
Sbjct: 35 YVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYIS 94
Query: 304 IINVDGNILKIDV 342
++D I++ D+
Sbjct: 95 RTSLDERIIRADL 107
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 31.9 bits (69), Expect = 0.093
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNG 303
+V + S + + ++ +IF ++ +VR++ + T +GF ++ F +E+ AID
Sbjct: 104 FVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLN 163
Query: 304 IINVDGNILKIDVAE 348
G +L + A+
Sbjct: 164 SQEFYGRVLNVQKAK 178
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 118 YKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKA 288
++ +VGNL + + + + F + S+ ++V D+E K +GF +V F+ + +KA
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKA 86
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 29.5 bits (63), Expect = 0.50
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 148 GIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVE 258
GI+ NR+ D + N R+V+D E + + YVE
Sbjct: 39 GILYDSDNRVVDDFFLNNKRIVLDSEIEFNRTIVYVE 75
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.5 bits (63), Expect = 0.50
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 121 KAYVGNLPSGIIQGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI 291
K Y+ NLP + + + + P + + +L+ + KGFC+ EF+ D AI
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAI 368
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.66
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 130 VGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAID 294
V NL + ++ +F I+ V L DKET + KGF +V + + +KA D
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARD 261
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.7 bits (61), Expect = 0.87
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 300
++G L + + I +++ L V+L+ ++ T G+C+VEF + A+ +N
Sbjct: 96 WMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEF 261
+VGNLP + F + +VR+ DK + + KG+ +VEF
Sbjct: 95 FVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 1.5
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +1
Query: 127 YVGNLPSGIIQGDINRIF-PDLSIKNVRLV---MDKETDKFKG--FCYVEFEYLEDLMKA 288
YVGNLPS D++ +F P + ++ +K TD F ++ FE A
Sbjct: 23 YVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADNA 82
Query: 289 I-DLNGIINVDGNILKID 339
I LNG + GN LK++
Sbjct: 83 IASLNG-SSFQGNTLKVE 99
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 109 EPPYKAYVGNLPSGIIQGDINRIFPDL-SIKNVRLVMDKETDKFKGFCYVE 258
EP + +VGNLPSG+ + F ++ ++R++ K + F F VE
Sbjct: 584 EPTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHS-AFLNFDSVE 633
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 163 DINRIFPDLS-IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLNGIINVDGNILKID 339
D+ IF I + +++ DKET + ++EF+ E + KA + +D + + +D
Sbjct: 259 DLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVD 318
Query: 340 VAE 348
++
Sbjct: 319 FSQ 321
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 109 EPPYKAYVGNLPSGIIQGDINRIFPDLSI 195
E YKA+V NL I GDI + P I
Sbjct: 212 EDGYKAFVSNLKEHIFNGDIFQAVPSQRI 240
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 193 IKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAIDLN 300
+ V L+ +KET K + F + +F L+D ++ N
Sbjct: 98 VSTVTLIREKETQKSRCFAFAKFVSLQDSKDWMEAN 133
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -3
Query: 354 FFFSDINF*YITIYVN----NPIQIYCFHQIFEIFKFYIAKSFEFVCL 223
FFFS +I I+++ N + +CF F +F F+ SF F L
Sbjct: 83 FFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFF---SFLFTSL 127
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 230 SVSLSITNLTFFIDRSGKILFISP*IIPEGKFPTYALYGG 111
SVS+ +L + R+G L + P ++ K YAL GG
Sbjct: 184 SVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAGG 223
>SPAC19D5.11c |ctf8||DNA replication factor C complex subunit
Ctf8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/46 (21%), Positives = 27/46 (58%)
Frame = +1
Query: 154 IQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVEFEYLEDLMKAI 291
+Q + R L I +++++ +K ++K K V +Y+E +++++
Sbjct: 19 VQATLERKADSLHIGDLKIIKEKNSEKKKATLTVGNQYMEGVVESL 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,549
Number of Sequences: 5004
Number of extensions: 36053
Number of successful extensions: 139
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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