Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11h10
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/62 (17%), Positives = 28/62 (45%)
 Frame = +2

Query: 479 ENDDIIYKKLFDKQEGRILCCKFNETSSILVTGSVNTIRVWNVETGHATTRISVSRRGKE 658
           + +D+ Y+++ D  + ++     ++   +L   + NT+  WN         I V  R ++
Sbjct: 288 QGNDVQYERVQDVFDSQLTVKAVSKNGVLLFGLANNTLSCWNEHQSLDRQNIDVVARNED 347

Query: 659 VI 664
            +
Sbjct: 348 TL 349


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 107 VHRIRYYNPQPTPVNC 154
           VH +  YN +P P +C
Sbjct: 148 VHSLSDYNDKPIPASC 163


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 690 FSSVTRDQTITSLPRLLTDIRVVACPVSTFHTLIVFTDPVTSMLLVSL 547
           +S +T + T+       T   ++ C   TF T++VF  P  S   VSL
Sbjct: 236 YSDITFNITMRRKTLFYTVNLIIPCVGITFLTVLVFYLPSDSGEKVSL 283


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 395 HIQLIILYFLYTFL 354
           H  L +LY L+TFL
Sbjct: 48  HYLLALLYILFTFL 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,757
Number of Sequences: 438
Number of extensions: 4573
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)