Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11h08
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.64 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.0  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   6.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 236 NTLFLFNHVFEVTNSTTERHLSDCHCGLICVLKV 135
           N  FL + +F+         LSD   GL C + V
Sbjct: 312 NARFLMDSMFDFAERVNSLRLSDAELGLFCSVVV 345


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 138 SEHGGLNHELCRISQGYPAPESNDPLLFLKHRAAFTF 28
           +E  GLNH    ++  YP    ++ L F + R  F F
Sbjct: 223 TEDVGLNHFYFMLNHNYPPFMLSNSLNFPQIRGEFYF 259


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 121 QTSVFTLRTHMRPQWQSE 174
           QT VF L TH    W S+
Sbjct: 171 QTIVFHLETHPNVTWYSQ 188


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 138 SEHGGLNHELCRISQGYPAPESNDPLLFLKHRAAFTF 28
           +E  GLNH    ++  YP    ++ L F + R  F F
Sbjct: 223 TEDVGLNHFYFMLNHNYPPFMLSNSLNFPQIRGEFYF 259


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 78 ESNDPLLFLKHR 43
          +SN+PLL L+HR
Sbjct: 49 DSNEPLLPLRHR 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,405
Number of Sequences: 438
Number of extensions: 3518
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)