Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11h05
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    29   0.46 
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    29   0.61 
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    28   1.4  
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    28   1.4  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   3.3  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    26   4.3  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    26   5.7  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   5.7  
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    26   5.7  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   7.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   7.6  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   10.0 
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   10.0 
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   10.0 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   10.0 

>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 9/187 (4%)
 Frame = +3

Query: 3   FMRNFCIIQTDDMQFYKTKMANLFSLNNIVAFQCEVMDKQKIYITDLLQVFKYKYNN--- 173
           F+R   + Q       K  + +LF   NIV F+  + D+Q +    L ++ K+ Y N   
Sbjct: 212 FLRKQLLYQCKSCVKPKKILVDLFHRINIVYFRSSIYDEQSLTSLILARLNKFSYPNYVL 271

Query: 174 -RTQYECGVNASYAIDPVTAIECINYMNSNVQSVTLTDTCPEIELRFQQFFDPPLQQSDY 350
            RT       A   ++ V  +E    +    ++   +D    +E     FF+     S Y
Sbjct: 272 SRTSNVFNCRAQ-CLEYVEVLELSKNLVPIFENTAASDK-EALEQALNSFFEIYPIWSTY 329

Query: 351 MTVSVDGYVV-----LDTELRYVKYKWMPTTELEYDAVNNSFNTLNGPLNGLVILTNLPE 515
           +   +  + V     +DT L    + + P     Y  ++ S N L       V    L  
Sbjct: 330 LNEDIREFWVEENRKVDTRLVRFSFSFRPGAVYTY-LIHKSLNILAKSRLVEVEHEILDT 388

Query: 516 LLHENIY 536
           LL +NIY
Sbjct: 389 LLSQNIY 395


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 123 KIYITDLLQVF-KYKYNNRTQYECGVNASYAIDPVTAIECINYMNSNVQSVTLTDTCPEI 299
           +I   D L+ F +  + +  QY+    A   ++   A+ C++Y+N N+ +   T  C EI
Sbjct: 389 RISFADYLETFLQGDWLSSPQYKSICQAILRMNSTKALACLDYLNENIFTGNQTMKCLEI 448


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 378 VLDTELRYVKYKWMPTTELEYDAVNNSFNTLN 473
           ++D+ ++  K K  P+    +D ++NSFNTL+
Sbjct: 424 LIDSAMQTEKVKKDPSLSQVFDGISNSFNTLH 455


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +3

Query: 222 VTAIECINYMNSN--VQSVTLTDTCPEIELRFQQFFDPPLQQSDYMTVSVDGYVVLDTEL 395
           +  IEC N +  +  +++  LT  C +    F+  FD  + +SD    + D + V+D   
Sbjct: 21  IDCIECHNEIADHPLLKTSELTLICKKCRKAFRIQFDQTMDESDEYCPNCDNHFVIDAIT 80

Query: 396 RYVKYKWMPTTELEYDAVN 452
           +  K K   + +L+   +N
Sbjct: 81  KVEKPKAPISPKLDLRMLN 99


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 63  ANLFSL-NNIVAFQCEVMDKQKIYITDLL 146
           AN+ S+ NN      E+ DK+KIYI +L+
Sbjct: 158 ANVISIYNNGKGIPIEIHDKEKIYIPELI 186


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 513 ELLHENIYECVIADTTINVLKHRRDRIV 596
           EL+H+ I   ++ D+T+  + H+ D IV
Sbjct: 204 ELVHDKIPATLVTDSTVASIMHKIDAIV 231


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +3

Query: 369 GYVVLDTELRYVKYKWMPTTELEYDAVNNSFNTL 470
           GYV+ +     +  +WM T ++++D + +++N L
Sbjct: 374 GYVIDNIRSGKIDPRWMVTNKIKFDDLPDAYNKL 407


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 542 TFVNVFVQQLRQVG*NHETVQWPIECVKRIIHGVILQLGCRHPFIFDVS 396
           TF+++ ++       N     +P+E +   + G  + L C+ P IFD++
Sbjct: 477 TFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMT 525


>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/100 (18%), Positives = 42/100 (42%)
 Frame = +3

Query: 39  MQFYKTKMANLFSLNNIVAFQCEVMDKQKIYITDLLQVFKYKYNNRTQYECGVNASYAID 218
           M  ++ +     +L+   +   E+++ +  Y  D    +  KY  +  ++C  + +  + 
Sbjct: 192 MDAFQLRAQKQMTLSYYASQLAELINDEVAYPGDNPAAYSQKYATQIMHQCVESMARLLA 251

Query: 219 PVTAIECINYMNSNVQSVTLTDTCPEIELRFQQFFDPPLQ 338
           PVT+ E   ++ S+ +    + +  E     Q   DP  Q
Sbjct: 252 PVTS-ETTEHVGSDCEFTRKSSSSVEFSDHSQDSGDPSQQ 290


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 69  LFSLNNIVAFQCEVMDKQKIYITDLLQVFKYKYNNRTQYE 188
           L +LN+I A     ++K+ I  TDL   FK++ N+   YE
Sbjct: 349 LAALNHISA-----LEKETISHTDLHHTFKHEVNSSNNYE 383


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/77 (22%), Positives = 34/77 (44%)
 Frame = +3

Query: 30  TDDMQFYKTKMANLFSLNNIVAFQCEVMDKQKIYITDLLQVFKYKYNNRTQYECGVNASY 209
           T+D Q Y+ +     S N++ +FQ E+   +   +  L+ +F   +     ++   NA  
Sbjct: 203 TNDEQVYRLRSIRAGSPNSVCSFQFEIPSTRPPSLDQLIHLFN-DFLRHPVFDFDENAIE 261

Query: 210 AIDPVTAIECINYMNSN 260
            +   T  E   ++ SN
Sbjct: 262 MLQSCTPDEKWCFIRSN 278


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 548 RGHDNKRVETSSRPNRAKLKHVKRIE 625
           RG + ++    S PN  KLKH+K I+
Sbjct: 311 RGANGQKNRFRSNPNDPKLKHLKFIQ 336


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 493 TRPFNGPLSVLNELFTASYSNSVVGIHLYLTYLNSVSSTTYPSTDTV 353
           T    G LS L     A+Y +  V  +L+ TY    S  TY S  ++
Sbjct: 596 TEQGEGDLSNLGVSVNATYHDGTVRYNLFNTYGYDQSRVTYDSLTSI 642


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 432 LEYDAVNNSFNTLNGPLNGLVILTNLPELLHENI 533
           ++++A+  S N L   +N   I   +PEL  ENI
Sbjct: 118 MQWEALKKSINGLINKVNKSNIRDIIPELFQENI 151


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = -1

Query: 532  MFSCSNSGKLVKITRPFNGPLSVLNELFTASYSNSVVGIHLYLTYLNSVSSTTYPSTDTV 353
            +F   N G L +   P N    +   ++  S  N  +   L+L++    SS      D+ 
Sbjct: 1984 IFVTMNPGYLGRFKLPSNLK-KLFRPIWMGSPDNKKICEILFLSFGFKESSLLSQVLDSF 2042

Query: 352  M*SLCCSGGSKNC 314
               LCCSG   NC
Sbjct: 2043 F--LCCSGSLSNC 2053


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,804
Number of Sequences: 5004
Number of extensions: 54846
Number of successful extensions: 169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)