Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11h05
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808...    30   1.9  
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594...    29   4.5  
08_01_0208 + 1662101-1662223,1663130-1663243,1663327-1663468,166...    28   5.9  
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410           28   7.8  

>10_08_1005 - 22179407-22180122,22180210-22180653,22180737-22180861,
            22180939-22181169,22181250-22181805,22181896-22182312,
            22182405-22183216,22183653-22183738,22184464-22184534,
            22184553-22185573,22186018-22186062,22186252-22186326,
            22186797-22186871
          Length = 1557

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 423  TTELEYDAVNNS-FNTLNGPLNGLVILTNLPELLHENIYECVI 548
            +TEL    +N+S    +NGP+N LV    +P+ L  ++ EC +
Sbjct: 1191 STELLVKGMNHSPLEQINGPVNQLVCSPKMPQSLGIDLNECPV 1233


>08_02_0644 -
           19658270-19658626,19659142-19659218,19659256-19659430,
           19659543-19659596,19659691-19659858,19660756-19660953,
           19661546-19661632,19661739-19661827,19662499-19662955
          Length = 553

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 490 RPFNGPLSVL-NELFTA-SYSNSVVGIHLYLTYLNSVSSTTYPSTDTVM 350
           R F GPL    ++ FT  SY++++ G H  L  +NS   + + +T  V+
Sbjct: 250 RAFRGPLKPQKDQSFTPMSYTSTIPGQHFALLLINSEEGSKFQATGAVL 298


>08_01_0208 +
           1662101-1662223,1663130-1663243,1663327-1663468,
           1663496-1663610,1663936-1664077,1664216-1664313,
           1664396-1664525,1664740-1664884,1665163-1665389
          Length = 411

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 236 FDGRHRIYSV*RVHAALVLCSIVVFVFK 153
           FD R + ++V +V AALVL ++ +F+ K
Sbjct: 4   FDARRKPHNVGKVIAALVLTTLCIFILK 31


>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
          Length = 1044

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 304 NSISGQVSVNVTLCTLLFM*FIHSMAVTGSIAYDAFTPHSYCVRLLYLYLNTCNKSV 134
           N +SG++   +  C  L    + S A+TGSI+ D F   +    LL L  N    S+
Sbjct: 515 NQLSGRIPTTLARCQQLLALNLSSNALTGSISGDMFVKLNQLSWLLDLSHNQFISSI 571


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,334,774
Number of Sequences: 37544
Number of extensions: 341777
Number of successful extensions: 1016
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)