Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11h05
         (676 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL356390-5|CAI13559.1|  398|Homo sapiens chromosome 1 open readi...    31   3.7  
AK091952-1|BAC03775.1|  398|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AB065756-1|BAC05976.1|  311|Homo sapiens seven transmembrane hel...    31   4.9  
DQ278870-1|ABB90562.1|  697|Homo sapiens TECT2 protein.                30   8.6  
BC009112-1|AAH09112.1|  697|Homo sapiens chromosome 12 open read...    30   8.6  

>AL356390-5|CAI13559.1|  398|Homo sapiens chromosome 1 open reading
           frame 172 protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 108 PHTERPQCCLAKTDWPFWFCRIAYRRFE*CKNC 10
           P  E P CCL    W + +CR A+  F  C++C
Sbjct: 67  PALESPTCCLLWRPWVWEWCRAAF-CFRRCRDC 98


>AK091952-1|BAC03775.1|  398|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34633 fis, clone KIDNE2015710. ).
          Length = 398

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 108 PHTERPQCCLAKTDWPFWFCRIAYRRFE*CKNC 10
           P  E P CCL    W + +CR A+  F  C++C
Sbjct: 67  PALESPTCCLLWRPWVWEWCRAAF-CFRRCRDC 98


>AB065756-1|BAC05976.1|  311|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 311

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 245 VYTFDGRHRIYSV*RVHAALVLCSIVVFVFKHLQ 144
           ++T +GRHR +     H  +VLC  V  VF +L+
Sbjct: 227 IHTSEGRHRAFQTCASHCIVVLCFFVPCVFIYLR 260


>DQ278870-1|ABB90562.1|  697|Homo sapiens TECT2 protein.
          Length = 697

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +3

Query: 21  IIQTDDMQFYKTKMANLFSLNNIVAFQCEVMDKQKIYITDLLQVFKYKYNNRTQYECGVN 200
           I+  ++   +K    N  S  N+  F+ E+   QK  +T    V    YN+  + E   N
Sbjct: 378 IVNVEEHYIFKWNN-NTISEINVKIFRAEINAHQKGIMTQRFVVKFLSYNSGNEEELSGN 436

Query: 201 ASYAI-DPVTAIECINYMNSNVQSVTL 278
             Y +  PV A+  IN MN NV ++ L
Sbjct: 437 PGYQLGKPVRALN-INRMN-NVTTLHL 461


>BC009112-1|AAH09112.1|  697|Homo sapiens chromosome 12 open reading
           frame 38 protein.
          Length = 697

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +3

Query: 21  IIQTDDMQFYKTKMANLFSLNNIVAFQCEVMDKQKIYITDLLQVFKYKYNNRTQYECGVN 200
           I+  ++   +K    N  S  N+  F+ E+   QK  +T    V    YN+  + E   N
Sbjct: 378 IVNVEEHYIFKWNN-NTISEINVKIFRAEINAHQKGIMTQRFVVKFLSYNSGNEEELSGN 436

Query: 201 ASYAI-DPVTAIECINYMNSNVQSVTL 278
             Y +  PV A+  IN MN NV ++ L
Sbjct: 437 PGYQLGKPVRALN-INRMN-NVTTLHL 461


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,980,500
Number of Sequences: 237096
Number of extensions: 1838884
Number of successful extensions: 3782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3782
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)