Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11h05
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80455-6|AAB37884.1|  159|Caenorhabditis elegans Hypothetical pr...    32   0.32 
Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U64847-2|AAN84826.1|   62|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocyto...    28   7.0  
U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocyto...    28   7.0  
AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.      28   7.0  
Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF016661-2|AAB66051.1|  246|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U80455-6|AAB37884.1|  159|Caenorhabditis elegans Hypothetical
           protein T01D1.4 protein.
          Length = 159

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 273 TLTDTCPEIELRFQQFFDPPLQQSDYMTVSVDGYVVLDTE 392
           T+++T  E + + +QF++P +Q+ D +++ V+G    D E
Sbjct: 70  TVSETMLEFDDKMEQFYEPQVQKEDVISLVVEGTCYYDVE 109


>Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical
           protein F26F2.7 protein.
          Length = 712

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 584 ATMFQHVYCRVRD--HTFVNVFVQQLRQVG*NHETVQWPIECVKRIIHGVILQLGCRH 417
           A +FQ     VR+  H F  +FV  +R    N   V W I+    +I  +I+ +GC +
Sbjct: 364 ANLFQMACSDVRERFHIFALLFVVMIR----NMTAVNWNIDSFTEMIPDIIMVVGCEY 417


>U64847-2|AAN84826.1|   62|Caenorhabditis elegans Hypothetical
           protein F08F3.10 protein.
          Length = 62

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 586 SRRCFNTFIVVSAITHS*MFSCSNSGKLVKITRPFNGPLSVLNELFTA 443
           SR  + T IV+  I H+ +F+C+N   L K  R  +  L +LNE+ +A
Sbjct: 4   SRVAWFTLIVI--IFHT-LFACTNLYLLAKFHRFLDEKLMILNEILSA 48


>U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform b
           protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 420 PTTELEYDAVNNSFNTLNGPLNG 488
           PT + +YD++  S N +NG L+G
Sbjct: 115 PTDQAKYDSIFQSLNPVNGKLSG 137


>U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform a
           protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 420 PTTELEYDAVNNSFNTLNGPLNG 488
           PT + +YD++  S N +NG L+G
Sbjct: 115 PTDQAKYDSIFQSLNPVNGKLSG 137


>AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 420 PTTELEYDAVNNSFNTLNGPLNG 488
           PT + +YD++  S N +NG L+G
Sbjct: 160 PTDQAKYDSIFQSLNPVNGKLSG 182


>Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical
           protein T19B10.4a protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 41  AILQNQNGQSVFAKQHCGLSV*GYGQTKDLHYRFVASV*IQIQQSN 178
           AI  N NG   FA     + V G+G+  ++H  F   +  +++Q N
Sbjct: 132 AIGNNMNGAQPFAGPEPSMEVPGFGKNSNIHELFGKMIWRKMEQIN 177


>Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical
           protein F38B7.4 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -1

Query: 589 RSRRCFNTFIVVSAITHS*MFSCSNSGKLVKITRPFNGPLSVLNELFTASYSNSVVGIHL 410
           + R  FN   +V A  +  +   ++ G  V +T      +S   E +  S SNS+   + 
Sbjct: 51  KERTAFNVICMVRAFVNLYILITNHLGLFVPMTLSGKAIVSKTLETWAISMSNSLYMANE 110

Query: 409 YLTYLNSVS 383
           YLT + SV+
Sbjct: 111 YLTVVISVN 119


>AF016661-2|AAB66051.1|  246|Caenorhabditis elegans Hypothetical
           protein F02E11.3 protein.
          Length = 246

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 457 ELFTASYSNSVVGIHLYLTYLNSVSSTTY 371
           ++    Y+ +V G HL+L +LNS +S+ +
Sbjct: 119 QIMDVIYNTNVTGEHLWLCFLNSETSSNF 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,348,919
Number of Sequences: 27780
Number of extensions: 323038
Number of successful extensions: 947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)