Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11h05
(676 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 24 1.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 23 3.5
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 6.1
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 6.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 6.1
AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein. 21 8.1
AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein. 21 8.1
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 23.8 bits (49), Expect = 1.5
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -1
Query: 502 VKITRPFNGPLSVLNELFTASYSNSVVGIHLYLTYLNSVSSTTYPSTDTVM 350
V+I R N ++ ++ T + +LYLTY +V +P T++
Sbjct: 332 VRIQRQENNIRPMVKQIDTVAAEWPATTNYLYLTYNGTVHDVEFPGXYTMV 382
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +3
Query: 321 FDPPLQQSDYMTVSVDGYVVLDTELRYVKYKWMPTTELEYDAVNNSFNTLNGPLNGLVIL 500
F P + +T+ V + L L V MPTT + + FN + + V+L
Sbjct: 216 FTLPPDSGEKLTLGVTILLSLTVFLNLVAES-MPTTSDAVPLIGSYFNCIMFMVASSVVL 274
Query: 501 TNLPELLHENIYECVIADTTINVL 572
T L + H + + + I +L
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKML 298
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +3
Query: 321 FDPPLQQSDYMTVSVDGYVVLDTELRYVKYKWMPTTELEYDAVNNSFNTLNGPLNGLVIL 500
F P + +T+ V + L L V MPTT + + FN + + V+L
Sbjct: 216 FTLPPDSGEKLTLGVTILLSLTVFLNLVAES-MPTTSDAVPLIGSYFNCIMFMVASSVVL 274
Query: 501 TNLPELLHENIYECVIADTTINVL 572
T L + H + + + I +L
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKML 298
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +3
Query: 321 FDPPLQQSDYMTVSVDGYVVLDTELRYVKYKWMPTTELEYDAVNNSFNTLNGPLNGLVIL 500
F P + +T+ V + L L V MPTT + + FN + + V+L
Sbjct: 216 FTLPPDSGEKLTLGVTILLSLTVFLNLVAES-MPTTSDAVPLIGSYFNCIMFMVASSVVL 274
Query: 501 TNLPELLHENIYECVIADTTINVL 572
T L + H + + + I +L
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKML 298
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 22.6 bits (46), Expect = 3.5
Identities = 6/21 (28%), Positives = 14/21 (66%)
Frame = +3
Query: 351 MTVSVDGYVVLDTELRYVKYK 413
+ +S+D Y+ + ++Y K+K
Sbjct: 278 VAISIDRYIAVTQPIKYAKHK 298
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.8 bits (44), Expect = 6.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 200 VHAALVLCSIVVFVFKHLQQICNVNLL 120
V A + +C+ VFVF L + C VN++
Sbjct: 307 VDAFMSVCT--VFVFMALMEYCLVNIV 331
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +2
Query: 560 NKRVETSSRPNRAKLKHVKRI 622
+ R E+S++ + KLKH++ +
Sbjct: 1794 SSRTESSNQLDAGKLKHIRAV 1814
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 6.1
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +2
Query: 560 NKRVETSSRPNRAKLKHVKRI 622
+ R E+S++ + KLKH++ +
Sbjct: 1790 SSRTESSNQLDAGKLKHIRAV 1810
>AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein.
Length = 136
Score = 21.4 bits (43), Expect = 8.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 452 IHGVILQLGCRHPFIFDVSQLGVEHDIP 369
+HG LG RH + F + EH P
Sbjct: 45 VHGHREGLGRRHRYNFQLKPYNPEHKPP 72
>AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein.
Length = 135
Score = 21.4 bits (43), Expect = 8.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 452 IHGVILQLGCRHPFIFDVSQLGVEHDIP 369
+HG LG RH + F + EH P
Sbjct: 46 VHGHREGLGRRHRYNFQLKPYNPEHKPP 73
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,986
Number of Sequences: 438
Number of extensions: 3724
Number of successful extensions: 24
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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