Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11h04
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.96 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.96 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   2.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +2

Query: 578 EHASKANVVDKCIKMKRVKCNKVRTVTENCKQR*KDPKNLRIGR 709
           EH+   N+ ++ +K  ++   ++RT+ +   QR  D   L + +
Sbjct: 428 EHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSK 471


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +2

Query: 578 EHASKANVVDKCIKMKRVKCNKVRTVTENCKQR*KDPKNLRIGR 709
           EH+   N+ ++ +K  ++   ++RT+ +   QR  D   L + +
Sbjct: 134 EHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSK 177


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 664 IFGDRSNFVAFDTF 623
           +F D SNF+A +TF
Sbjct: 181 LFHDASNFIAMETF 194


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 645 FERSPKIVNSDEKIQKTYELAEFD 716
           +E  P +  +DE +QK Y +A  D
Sbjct: 161 YEVMPHLYFNDEVMQKAYNIAMGD 184


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 645 FERSPKIVNSDEKIQKTYELAEFD 716
           +E  P +  +DE +QK Y +A  D
Sbjct: 161 YEVMPHLYFNDEVMQKAYNIAMGD 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,509
Number of Sequences: 438
Number of extensions: 3885
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)