Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11g05
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 273 2e-74
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 267 9e-73
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 59 5e-10
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 44 2e-05
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 39 8e-04
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe... 32 0.095
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 29 0.67
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 27 2.7
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.7
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch... 26 4.7
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 8.2
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 8.2
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 273 bits (669), Expect = 2e-74
Identities = 120/204 (58%), Positives = 149/204 (73%)
Frame = +2
Query: 107 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGV 286
T GK+I C AAVAW+ PLSIE ++V PP+ EVR+KI +GVCHTDAYTLSGKDPEG+
Sbjct: 6 TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGL 65
Query: 287 FPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQ 466
FPV+L T+V+ GD V+ LY P+C TCKFC + KTNLC ++R+TQG+
Sbjct: 66 FPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGK 125
Query: 467 GVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGY 646
G+MPDGT RF C G L HFMGCSTFS+YTVV +IS+ + APLD VCLLGCG+ TGY
Sbjct: 126 GLMPDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGY 185
Query: 647 GAALNTAKVEPGSNCAIFGLGAVG 718
GAA TA ++ G + A+FGLG+VG
Sbjct: 186 GAATITADIKEGDSVAVFGLGSVG 209
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 267 bits (655), Expect = 9e-73
Identities = 121/206 (58%), Positives = 148/206 (71%)
Frame = +2
Query: 101 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPE 280
MS GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+ + VCHTDAYTLSG DPE
Sbjct: 1 MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPE 60
Query: 281 GVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQ 460
G FP+VL +V+PGDHV+ LY P+C CKFC + KTNLC K+R TQ
Sbjct: 61 GAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQ 120
Query: 461 GQGVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPT 640
G+G+MPDGT RF C+ + L H+MGCS+FSQYTVV +ISL ++ +APL +CLLGCGV T
Sbjct: 121 GRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTT 180
Query: 641 GYGAALNTAKVEPGSNCAIFGLGAVG 718
G+GA ++AKVE GS A+ G G VG
Sbjct: 181 GFGAVTHSAKVESGSTVAVVGCGCVG 206
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 59.3 bits (137), Expect = 5e-10
Identities = 58/199 (29%), Positives = 77/199 (38%), Gaps = 4/199 (2%)
Frame = +2
Query: 125 KCLAAVAWEAGKPLSI--EEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDP-EGVFPV 295
K LAAV G P ++ EE+ V P EV V I TGVCHTD + L G P P+
Sbjct: 6 KQLAAVFHTHGGPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPL 65
Query: 296 VLXXXXXXXXXXXXXXXTSVKPGDHV-VPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGV 472
+ T +K GD V V C C++C+ + +C + Q G
Sbjct: 66 IGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHI---QLSGY 122
Query: 473 MPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGA 652
DG TF Y + + E+ PL+ + C T Y
Sbjct: 123 TVDG------------------TFQHYCIANATHATIIPESVPLEVAAPIMCAGITCY-R 163
Query: 653 ALNTAKVEPGSNCAIFGLG 709
AL +KV PG I G G
Sbjct: 164 ALKESKVGPGEWICIPGAG 182
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 44.4 bits (100), Expect = 2e-05
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 6/202 (2%)
Frame = +2
Query: 131 LAAVAWEAGKPLSIEEIEVDPPKAG---EVRVKITATGVCH-TDAYTLSGKDPEGVFPVV 298
+ A W+ PL+++ EV P +V VK TA +C +D++ SG+ P +
Sbjct: 37 MKACVWDG--PLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGAI 94
Query: 299 LXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMP 478
L +++ GD VV + C C FC + C ++ V
Sbjct: 95 LGHESCGIVAEKGDEVNNLEIGDRVVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDV-N 153
Query: 479 DGTRRFRCKG--QELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGA 652
G+ G + L GC EI+ CK+ + P D L V
Sbjct: 154 YGSHHSAIFGYTKLLGDVPGCQAEYIRVPFAEINCCKLPDDIP-DSEGLFMSDVLCTSLH 212
Query: 653 ALNTAKVEPGSNCAIFGLGAVG 718
A +V+ G AI+G+G +G
Sbjct: 213 ACTLGEVKKGDTVAIWGMGPIG 234
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 38.7 bits (86), Expect = 8e-04
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +2
Query: 206 EVRVKITATGVCHTDA-YTLSGKDPEGVF--PVVLXXXXXXXXXXXXXXXTSVKPGDHVV 376
+V+V I ATG+C +D Y G + + P++L +S+KPGD V
Sbjct: 31 QVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVA 90
Query: 377 PLYVPQCNTCKFCLNPKTNLC 439
C C +C + + NLC
Sbjct: 91 VEPGCVCRLCDYCRSGRYNLC 111
>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 325
Score = 31.9 bits (69), Expect = 0.095
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 164 LSIEEIEVDPPKAGEVRVKITATGVCHTDAYTLSGKDPEGVFPVVL 301
+ I+ + + PK GE+ VKI A + +D +G P V+P ++
Sbjct: 23 IEIQSVPIPQPKNGELLVKIEAAAINPSDLMNATGGFPYTVYPRIV 68
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 29.1 bits (62), Expect = 0.67
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 530 GCSTFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAK--VEPGSNCAIFG 703
GC F +Y V+ +L + +++ L C T + + + V+PG+N + G
Sbjct: 116 GC--FQKYAVLPAHALVHAPKNLSFEEIATLPCAAVTAWNGLFGSKEHQVKPGNNVLVLG 173
Query: 704 LGAV 715
G V
Sbjct: 174 TGGV 177
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 362 GDHVVPLY-VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQEL 517
G HVV L V N C + KT KV + + P G+R++ C G L
Sbjct: 1036 GKHVVRLLQVRDANGCAASIT-KTQPAAKVSVVEMASLAPLGSRQYYCVGDRL 1087
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 575 LCKVAEAAPLDKVCLLGCGVPTGY 646
+CKV E A L CLL C T +
Sbjct: 979 ICKVREIASLSLTCLLDCSKMTTF 1002
>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
Crs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 229
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 3 LIGF*YFVTS--SSKRFIARL*FQHFVIGSCPVQSCQQ 110
L+ F +V S S + F+ L FQH S P +SC Q
Sbjct: 177 LLNFDIYVISLPSVESFLTPLIFQHVFFKSLPSESCDQ 214
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 125 KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATG 235
K ++ +AWE KPL + E+I D +GE+ V T +G
Sbjct: 63 KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSG 99
>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -1
Query: 680 LVQLWQYSRRLHNL*VHRIPANK--LYLMEPPLQLYREKFL-EQLCTD 546
+++ W+++R NL RIP + LY+ P L + E L EQ+ D
Sbjct: 70 VLEFWKWARTSRNLYRSRIPWKRAYLYVKRPALYIPGETVLVEQVYVD 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,382
Number of Sequences: 5004
Number of extensions: 61299
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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