Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11f12
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    26   0.60 
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    24   3.2  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    24   3.2  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    23   5.6  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   9.7  

>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 98  LIFVKRRDVRSSLHSRHGSARHCSAAGI 181
           + ++ R DVRSSLH+   S    S  G+
Sbjct: 364 ITYLNREDVRSSLHATKASTALTSGEGV 391


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 102 FL*NDGMFGARSTPVTGRPGIAVP 173
           FL    + G +S P+T  P  AVP
Sbjct: 416 FLQEHSLNGTKSAPITPPPSFAVP 439


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 197 FFL*GQS-RRHCNAGPTRDGSGASSEHPVVLQKSV*YTGPSMRELSDIKLKRTDTTL 30
           FF   QS R + N+         +SE  +++QK + Y      E+ D+K   TDT +
Sbjct: 73  FFSEKQSVRENGNSSAGEKKQKWTSEQHLLVQKIIKYKNHQYYEILDLKKTCTDTEI 129


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 187 RANPGGTAMPGRPVTGVERA 128
           RA PG TA+P R  T  + A
Sbjct: 49  RARPGATAVPRRSPTSPQSA 68


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 181 NPGGTAMPGRPVTGVER 131
           NP G+ + GRPV   E+
Sbjct: 88  NPRGSGISGRPVESTEQ 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 820,902
Number of Sequences: 5004
Number of extensions: 12810
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)