Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11f12
(199 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0838 - 6811525-6812364,6813085-6813211,6813321-6813670 29 0.39
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66... 27 2.8
12_02_1111 - 26157796-26160330 26 3.7
05_03_0457 + 14274533-14274879,14275575-14275605 26 3.7
02_02_0239 - 8177152-8177445,8177821-8178207,8178717-8179715,817... 26 3.7
04_03_0481 + 16433648-16433746,16435136-16435394,16435883-164362... 25 6.4
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 25 6.4
09_06_0150 - 21225086-21225511,21225775-21226125,21227180-212277... 25 8.5
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 25 8.5
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564... 25 8.5
03_02_0192 + 6295239-6295279,6295548-6295639,6295839-6296024,629... 25 8.5
01_06_1423 + 37263421-37263484,37264214-37265280,37265944-372660... 25 8.5
>07_01_0838 - 6811525-6812364,6813085-6813211,6813321-6813670
Length = 438
Score = 29.5 bits (63), Expect = 0.39
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 111 NDGMFGARST-PVTGRPGIAVPPGLAL 188
N G+ GA T PV PG + PPGL +
Sbjct: 260 NSGVIGASPTLPVVQEPGTSTPPGLVM 286
>08_01_0091 +
664913-664985,665281-665576,667197-667311,667901-667971
Length = 184
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3
Query: 77 MRELSDIKLKRTDTTL 30
M +SDIKL RTDTTL
Sbjct: 1 MAHISDIKLIRTDTTL 16
>12_02_1111 - 26157796-26160330
Length = 844
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 125 EHPVVLQKSV*YTGPSMRELSDIK 54
E P V+QK + GP R L+D+K
Sbjct: 285 EQPTVVQKVIDMRGPQARVLTDLK 308
>05_03_0457 + 14274533-14274879,14275575-14275605
Length = 125
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 178 PGGTAMPGRPVTGVERAPNIPS 113
PGG A P PVTG AP + S
Sbjct: 16 PGGEASPFAPVTGDHPAPALAS 37
>02_02_0239 -
8177152-8177445,8177821-8178207,8178717-8179715,
8179799-8179953,8180725-8180812,8180901-8181004,
8181327-8181549,8182251-8182335,8182425-8182816,
8182852-8183097
Length = 990
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 74 SLRDQYIKLIFVKR--RDVRSSLHSRHGSARHC 166
+L++Q + L+F + VR SL +HG R+C
Sbjct: 185 ALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRNC 217
>04_03_0481 +
16433648-16433746,16435136-16435394,16435883-16436261,
16436498-16436716,16436814-16436949,16437502-16437717,
16437773-16437835
Length = 456
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 195 FFIGPIPAALQCRADP*REWSELRTSRRFTKISLIYWSLNEGTFR 61
FFI P LQ R++ EW R R K+ ++W+ N+ R
Sbjct: 23 FFINYRPQPLQ-RSE---EWMRQRAKRLKMKVRTLFWTSNDVVVR 63
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -1
Query: 178 PGGTAMPG-RPVTGVERAPNIPSFYKNQFNILVP 80
PG +P P TG PN+P Y + +P
Sbjct: 273 PGIVTVPSTNPATGYSNNPNLPPLYPEPTPVTMP 306
>09_06_0150 -
21225086-21225511,21225775-21226125,21227180-21227718,
21227813-21227929,21228038-21228290
Length = 561
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 135 STPVTGRPGIAVPP 176
STPVTG PG PP
Sbjct: 503 STPVTGSPGRVQPP 516
>07_03_1690 - 28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 85 PVY*TDFCKTTGCSELAPLPSRVGPAL 165
P+ T F C E PLP+R PA+
Sbjct: 931 PILGTSFLCEKFCEEFPPLPARKWPAV 957
>03_04_0044 +
16754638-16754676,16755472-16755598,16756325-16756451,
16756866-16757431,16757896-16758211,16758373-16758613,
16758734-16758823,16759343-16759780,16759877-16760185,
16760392-16760406
Length = 755
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 118 GCSELAPLPSRVGPALQCRRDWP 186
G S+LAP + GP QC++ +P
Sbjct: 579 GTSQLAPNGMKYGPPHQCKQMFP 601
>03_02_0192 +
6295239-6295279,6295548-6295639,6295839-6296024,
6296531-6296672,6296729-6296849
Length = 193
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 121 CSELAPLPSRVGPALQCRR 177
C+E PL SRV P + C R
Sbjct: 6 CAEAFPLSSRVPPPVYCMR 24
>01_06_1423 +
37263421-37263484,37264214-37265280,37265944-37266006,
37266320-37266433
Length = 435
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -1
Query: 199 FFFYRANPGGTAMP---GRPVTGVERAPNIPSFYKN 101
FF Y+A+PG ++P P GV R PN Y N
Sbjct: 208 FFAYKASPGSVSLPYVLFEPNPGV-RDPNTNLSYDN 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,685,479
Number of Sequences: 37544
Number of extensions: 91280
Number of successful extensions: 263
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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