Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11f12
         (199 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    25   7.4  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    25   7.4  
Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 112  TTGCSELAPLPSRVGPAL 165
            TTGCS L P   +VGP +
Sbjct: 1215 TTGCSRLRPTLEKVGPRI 1232


>AL110471-2|CAB63306.1|  479|Caenorhabditis elegans Hypothetical
           protein T06D10.2 protein.
          Length = 479

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 100 DFCKTTGCSELAPLPSRVGPALQCRRDWPYKKK 198
           D+ K TG  ELA  P  VGP      D P + K
Sbjct: 439 DWAKRTGKKELAMKPRAVGPVFNNCDDQPEEFK 471


>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 178 PGGTAMPGRPVTGVERAP 125
           PG    PGRP TG   AP
Sbjct: 166 PGSDGQPGRPATGGGAAP 183


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 126 GARSTPVTGRPGIAV 170
           GAR  P TGRPG  +
Sbjct: 118 GARINPATGRPGFCI 132


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 126 GARSTPVTGRPGIAV 170
           GAR  P TGRPG  +
Sbjct: 118 GARINPATGRPGFCI 132


>Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical
           protein M18.1 protein.
          Length = 337

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +3

Query: 111 NDGMFGARSTPVT---GRPGIAVPPG 179
           NDG  GA   P T   GRPG A  PG
Sbjct: 193 NDGRPGAPGAPGTRSVGRPGTAGSPG 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,682,289
Number of Sequences: 27780
Number of extensions: 80586
Number of successful extensions: 221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)