Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11f12
         (199 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   1.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   3.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          19   4.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          19   4.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          19   4.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          19   4.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          19   4.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          19   4.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    19   4.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         19   5.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    19   5.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   5.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    19   5.7  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    19   7.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          19   7.5  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      19   7.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    19   7.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    18   9.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    18   9.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    18   9.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    18   9.9  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 128 SEHPVVLQKSV*YTGPSMRELS 63
           +E PVV Q S  YT P  +++S
Sbjct: 65  NETPVVSQGSDSYTAPDGQQVS 86


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 102 FL*NDGMFGARSTPVT 149
           F  +DG+FG   +PVT
Sbjct: 248 FTVHDGIFGMALSPVT 263


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 129  ARSTPVTGRPGIAVPP 176
            AR+ PV+G P    PP
Sbjct: 1848 ARNIPVSGSPEPPPPP 1863



 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 68  LSDIKLKRTD 39
           LSD+ +KRT+
Sbjct: 837 LSDLSIKRTE 846


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 128 SSLHSRHGSARH 163
           SS HSR+  +RH
Sbjct: 228 SSCHSRYEDSRH 239


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 128 SSLHSRHGSARH 163
           SS HSR+  +RH
Sbjct: 228 SSCHSRYEDSRH 239


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 128 SSLHSRHGSARH 163
           SS HSR+  +RH
Sbjct: 228 SSCHSRYEDSRH 239


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 128 SSLHSRHGSARH 163
           SS HSR+  +RH
Sbjct: 228 SSCHSRYEDSRH 239


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 128 SSLHSRHGSARH 163
           SS HSR+  +RH
Sbjct: 228 SSCHSRYEDSRH 239


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 128 SSLHSRHGSARH 163
           SS HSR+  +RH
Sbjct: 228 SSCHSRYEDSRH 239


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 128 SSLHSRHGSARH 163
           SS HSR+  +RH
Sbjct: 228 SSCHSRYEDSRH 239


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 154 GPALQCRRDWPYKK 195
           GP LQ   DW + K
Sbjct: 101 GPLLQPYPDWSFAK 114


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 154 GPALQCRRDWPYKK 195
           GP LQ   DW + K
Sbjct: 101 GPLLQPYPDWSFAK 114


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 159 RADP*REWSELRTSRRFTKISLIYWSLNEGTFRY 58
           R++P   WSE   +     + L + S+N+    Y
Sbjct: 566 RSNP-TPWSEDAMTEALEAVRLGHMSINQAAIHY 598


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 154 GPALQCRRDWPYKK 195
           GP LQ   DW + K
Sbjct: 101 GPLLQPYPDWSFAK 114


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 133 RAPNIPSFYKNQFNILVP 80
           R P    F KN+  ++VP
Sbjct: 60  RCPPGSKFIKNRCRVIVP 77


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 128 SSLHSRHGSARH 163
           SS HSR+   RH
Sbjct: 228 SSCHSRYEDLRH 239


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 133 RAPNIPSFYKNQFNILVP 80
           R P    F KN+  ++VP
Sbjct: 60  RCPPGSKFIKNRCRVIVP 77


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 102 FL*NDGMFGARSTPVT 149
           F   DG+FG   +P+T
Sbjct: 248 FTAQDGIFGMALSPMT 263


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -1

Query: 181 NPGGTAMPGRPVTGVERAPN 122
           NP      G P TG    PN
Sbjct: 403 NPVTQKREGGPPTGATTGPN 422


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -1

Query: 181 NPGGTAMPGRPVTGVERAPN 122
           NP      G P TG    PN
Sbjct: 423 NPVTQKREGGPPTGATTGPN 442


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -1

Query: 181 NPGGTAMPGRPVTGVERAPN 122
           NP      G P TG    PN
Sbjct: 372 NPVTQKREGGPPTGATTGPN 391


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 117 GMFGARSTPVTGR 155
           G+    STP TGR
Sbjct: 388 GLVSGSSTPGTGR 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,967
Number of Sequences: 438
Number of extensions: 1000
Number of successful extensions: 23
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)