Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11f10
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    29   0.13 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   1.7  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    24   3.8  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   5.0  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    23   6.7  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    23   8.8  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    23   8.8  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    23   8.8  

>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 184 ERSSLLQPLDLNGQVFSYPPKSVRVTVVGPP 276
           + S++LQPL++N  +   PPKS+  +++  P
Sbjct: 518 KHSAVLQPLEVNRSISIPPPKSISPSILHKP 548


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 97  P*PSCTISIPELSCSVRPANGQSCTIFRPERSSLLQPLDLNGQVFSYPPKS 249
           P PS + SI     +V+P + Q+ T   PE S + +  + +  + S  P S
Sbjct: 8   PKPSISPSIASSFPTVKPFSSQNSTTSNPELSHIEKESNASSIIISQQPLS 58


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 163 SCTIFRPERSSLLQPLDLNGQVFSYPPKSVR 255
           +C  +RP+        D+NG ++ + PK+++
Sbjct: 345 NCAAYRPDFEQCFTG-DMNGNIYMWSPKALK 374


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
 Frame = +1

Query: 175 FRPERSSLLQPLD------LNGQVFSYPPKSVR 255
           F PERS +  PLD      +NG  F  P K VR
Sbjct: 406 FAPERSPITLPLDPEIIREMNGFDFGPPEKIVR 438


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 115 ISIPELSCSVR--PANGQSCTIFRPERSSLLQPLDLNGQV 228
           I IP+ S S    P+N  + + F P+ SSL  P  ++  +
Sbjct: 64  IQIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKISESI 103


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 223 QVFSYPPKSVRVT 261
           ++F+YPPKSV+ T
Sbjct: 792 KLFAYPPKSVQPT 804


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = +1

Query: 103 PSCTISIPELSCSVRPANGQSCTIFRPERSSLLQPLDLNGQVFSYPPKSVRVTVVG 270
           PSC   I   +     +  ++C I R   ++     DL G +    PK  R   +G
Sbjct: 106 PSCKFEICSTNQYFSSSKPEACVIARESINAGEDITDLCGTIIKLSPKEERNIGIG 161


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 148 PANGQSCTIFRPERSSLLQPLDLNGQVFSYPPKSVRVTV 264
           P N QS   F P+ S  ++    NG      P ++++++
Sbjct: 6   PENEQSKKTFDPKDSMKIEETSTNGSSQPSQPSNIKLSI 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,133,648
Number of Sequences: 5004
Number of extensions: 18949
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)