Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11f09
(715 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 3.8
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 3.8
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 22 5.0
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 22 5.0
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 22 6.6
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 6.6
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 22 6.6
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 6.6
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 6.6
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 22 6.6
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 6.6
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 6.6
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 6.6
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 6.6
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 6.6
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 8.8
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 102 PSSSRITIGGLALMHQATLPCDLGYINPIIKSPIP 206
PS++R +G +A + PC + P+ P+P
Sbjct: 450 PSATRYDLGAVATVGTTVAPC---FEEPLPSLPLP 481
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.6 bits (46), Expect = 3.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHDFQH 226
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 328 PSSLGMAKGVSPPYFQVNDESQASRLIS 411
P+S+G++ VS P F+V Q + IS
Sbjct: 174 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 201
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 328 PSSLGMAKGVSPPYFQVNDESQASRLIS 411
P+S+G++ VS P F+V Q + IS
Sbjct: 113 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 140
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 196 SKKYATSSNSLRSRTHGFQH 215
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 196 SKKYATSSNSLRSRTHGFQH 215
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 196 SKKYATSSNSLRSRTHGFQH 215
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LRSR H H
Sbjct: 207 SKKYATSSNSLRSRTHGFQH 226
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 8.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 131 SRPYASSHPPLRSRLHQPDH 190
S+ YA+S LR+R H H
Sbjct: 207 SKKYATSSNSLRNRTHDFQH 226
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,885
Number of Sequences: 438
Number of extensions: 4398
Number of successful extensions: 37
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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