Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11f06
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    32   0.094
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    29   0.87 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   2.0  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.5  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    27   3.5  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   4.7  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   4.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   4.7  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   6.1  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    26   6.1  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    26   6.1  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   8.1  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   8.1  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.1  

>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 31.9 bits (69), Expect = 0.094
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 116 KTKGKRWQKGQSSNSNPKIQKYREMAKSRFF--QENLGSTGLTQQAVSKHEAMMTYGHKS 289
           K K + W K +        ++ +  +K  F   Q+N  S  L Q+ VSK  A  T     
Sbjct: 513 KIKNEAWSKQKEVKEKRNTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDL 572

Query: 290 NKTKSDAENEL 322
              +SDA +EL
Sbjct: 573 IDEESDALSEL 583


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = +2

Query: 122 KGKRWQKGQSSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSKHEAMMTYGHKSNKTK 301
           KGK  QK + S     ++  REM  S   Q+ L    L   A S  EA+M+  H+S+   
Sbjct: 292 KGKGKQKAEESTLTSDLENLREML-SELEQKTL---DLKHGAPSLEEAVMSKMHESSLLS 347

Query: 302 SDAENELTIVKE 337
            D+ +    V E
Sbjct: 348 KDSSSLAQAVAE 359


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 332 KELENMSVKTGDEGSESEYSGTLRSGTFKTFQTFASDWSQCSNISFHKLLN 484
           KE EN  V    E  + +  GT+R G   TF    S+WS+   +  HK+++
Sbjct: 430 KECENNVVVYMPEIDKDKLGGTMRLGLRPTFFQPNSEWSKLRKL--HKMVD 478


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 4/154 (2%)
 Frame = +2

Query: 80  TKMGKFRSKLKGKTKGKRWQKGQSSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSKH 259
           TK  K + K K K K  + +  +SS  +       + + S+   +NL S     +  +K 
Sbjct: 90  TKTEKAKVKPKAKKKNSKEKISKSSKQDEHKTDVHKESVSKL-SKNLESRNNRDENSAKR 148

Query: 260 EAMMTYGHKSNKTKSDAENELTIVKELENMSVKT--GDEGSESE--YSGTLRSGTFKTFQ 427
           E      + S++ ++D  N   +V      SV     D  +  +   SGTL  GT +  +
Sbjct: 149 EK-----NNSHQVEADTNNATEMVSSNAKKSVYPLYYDSATVKKGLKSGTLFKGTLRILE 203

Query: 428 TFASDWSQCSNISFHKLLNRFDSNNALHKEMLAV 529
              S ++   +I    +      N A H +++ V
Sbjct: 204 NHRSAFACMEDIPDFYVDGPIARNRAFHNDVVIV 237


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 251 SKHEAMMTYGHKSNKTKSDAENELTIVKELENMSVKTGDEGSESEYSGTLRSGTFKT 421
           SKHEA     H+S++    AE +    K+ +  S ++         S  LR+ T +T
Sbjct: 601 SKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKRSRSHSVSKPDSSKLRTWTDRT 657


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 236 TQQAVSKHEAMMTYGHKSNKTKSDAENELTIVKELENM 349
           +  A+ +H+A      KS +  S A+N L +++ELEN+
Sbjct: 97  SNNAIQEHKAAKFVSEKSLEKVSTADNNL-VLQELENL 133


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 92  KFRSK-LKGKTKGKRWQKGQSSNSNPKIQKY 181
           KFR K L+ K K +R+QK  +SN N    +Y
Sbjct: 51  KFREKRLEEKRKQERYQKFSTSNENKTCLRY 81


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 391 WYIKIRNIQDISNICI*LES 450
           WY+K RNI  +S+IC  L +
Sbjct: 98  WYLKERNINVLSDICFPLSN 117


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
 Frame = +2

Query: 134 WQKGQSSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSK-HEAMMTYGHKSNKTKSDA 310
           W+K  S  S+P + K+ +   S+  +E L +   T + VS      +T  ++     + A
Sbjct: 56  WKKAISIFSSPVVNKHEDSFDSKTDEEYLQNVSTTTEDVSMLINTPVTEKYEQEHRDTSA 115

Query: 311 ENELTIVKELEN-MSVKTGDEGSESEYSGTLRSGTFKTFQTFASDWSQCSNISFHKLLNR 487
           +   +IV++  N M      +  ++  +   + G        AS  S  S IS    LNR
Sbjct: 116 QATPSIVEQSPNQMLANFFSKKGKTPLNEIEKEGIISILNKSASPSS--SVISPAASLNR 173

Query: 488 FDSNNA 505
           F +  A
Sbjct: 174 FQTPRA 179


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 394 TRVFRL*ALVSGLDRHIFKLFYYGQFIFSI*FCFVRFMSICHHSFMLGHRLL 239
           T +F   +L S  +   F+LF+   F F + + F+ F ++    F+  H L+
Sbjct: 2   TGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFI-FATLHAFVFLFSHTLV 52


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
            2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/81 (22%), Positives = 34/81 (41%)
 Frame = +2

Query: 164  PKIQKYREMAKSRFFQENLGSTGLTQQAVSKHEAMMTYGHKSNKTKSDAENELTIVKELE 343
            PKI +      +    E+ G+ G TQ+  SK E M        + +S+ + E+T  + ++
Sbjct: 893  PKIIEMASNKAAELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNVKPEMTQQQMMD 952

Query: 344  NMSVKTGDEGSESEYSGTLRS 406
                  G    +   +  L+S
Sbjct: 953  QFQKVIGSFAQQINSNNWLQS 973


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = +2

Query: 524 AVLAAVTEVIKEQGGKETTTEYFAAL-METLKAS--ELEDNLVATITLLS--MGIKAVPQ 688
           A L      +  Q GKE TTEY   + +E LK    E+  N+++ + +++  +GI+ + Q
Sbjct: 341 AALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQ 400

Query: 689 AVL 697
           ++L
Sbjct: 401 SLL 403


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 161 NPKIQK-YREMAKSRFFQENLGSTGLTQQAVSKHEAMMTYGHKSNKTKSDAENELTIVKE 337
           N +I+K  ++M + +  +++   T + + A  K + +++ G  S+   S     + + +E
Sbjct: 364 NAQIEKSIKKMEERKLSEKSESKTAVNENATYK-DPVLSRGLSSSIDVSTGVALVNLPEE 422

Query: 338 LENMSVKTGDEGSESEYSGTLR 403
           LENM     D     EY  + R
Sbjct: 423 LENMKYLQIDTPESKEYPRSTR 444


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 203 FFQENLGSTGLTQQAVSKHEAMMTYGHKSNKTKSDAENELTIVKELENMS 352
           FFQ  +G      +  SK+EA        N+     EN L+ + EL + S
Sbjct: 116 FFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLSKIHELASNS 165


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 464 SFHKLLNRF-DSNNALHKEMLAVLAA 538
           +F KLL +  D +  LHKEML VL++
Sbjct: 873 NFMKLLKKTNDEHQNLHKEMLVVLSS 898


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +2

Query: 122  KGKRWQKGQSSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSKHEAMMTYG--HKSNK 295
            +GKR   G    + P   K  +  +SR F EN    GLT Q    H      G    + K
Sbjct: 777  EGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVK 836

Query: 296  TKSDAENELTIVKELENMSVK 358
            T      +  +VK +E++ V+
Sbjct: 837  TAETGYIQRRLVKAMEDVMVR 857


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,673
Number of Sequences: 5004
Number of extensions: 56588
Number of successful extensions: 169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)