Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11f06
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0171 + 12223269-12223508,12223594-12224262,12224399-12224899 30 2.1
12_02_0147 + 14403046-14403285,14403371-14404078,14404145-14404702 29 3.7
03_05_0545 + 25419031-25420758 29 3.7
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672... 29 3.7
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 4.8
07_03_1735 + 29126170-29126227,29126368-29126711,29126790-291269... 28 6.4
03_06_0266 + 32746379-32746836,32747898-32748273,32748367-327486... 28 8.5
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711... 28 8.5
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 28 8.5
>04_03_0171 + 12223269-12223508,12223594-12224262,12224399-12224899
Length = 469
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 149 SSNSNPKIQKYREMAKSRFFQENLGSTGL---TQQAVSKHEAMMTYGHKSNKTKS 304
SS + QKY E+AK F LGS G +Q + E M G K +S
Sbjct: 255 SSEEIRRSQKYAELAKKNKFPHRLGSAGYAPKVEQWTKEEEEMRKKGQPFTKKRS 309
>12_02_0147 + 14403046-14403285,14403371-14404078,14404145-14404702
Length = 501
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +2
Query: 128 KRWQKGQSSNSNP----KIQKYREMAKSRFFQENLGSTG 232
K+W+ + ++P + QKY E+AK F +LGSTG
Sbjct: 244 KQWEDFLTLKNSPEEIRRSQKYSELAKKYKFPHHLGSTG 282
>03_05_0545 + 25419031-25420758
Length = 575
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 572 ETTTEYFAALMETLKASELEDNLVATITLLSMG 670
+T +EYF A +E L A +A +TLLS+G
Sbjct: 133 DTASEYFCASLEGLSAELRLPPAIAGVTLLSLG 165
>02_05_0969 +
33165396-33165935,33166352-33166883,33166988-33167242,
33167515-33167606,33167745-33167942,33168049-33168240,
33168341-33168562,33168858-33169024,33169117-33169210,
33169308-33169364,33169459-33169587,33169681-33169752,
33170180-33170293,33170419-33170580,33170666-33170794,
33171057-33171158,33171266-33171342,33171470-33171592,
33171666-33172227
Length = 1272
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = +2
Query: 512 KEMLAVLAAVTEVIKEQGGKETTTEYFAALMETL-----KASELEDNLV--ATITLLSMG 670
+ + A AA+ + +++QG T YFAA L + D V A + LS
Sbjct: 48 QHLCATAAAMAQAVRDQGVAATPVAYFAAAAAALAPLARAGAGAADRHVSGALLAFLSAA 107
Query: 671 IKAVPQAVLR 700
+ A+P AV R
Sbjct: 108 VPALPPAVAR 117
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.7 bits (61), Expect = 4.8
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Frame = +2
Query: 239 QQAVSKHEAMMTYGHKSNKTKSDAENELTIVKELENMSVKTGDEGSESEYSGTLRSGTFK 418
+QA S HE + + +KSDAE T ++LEN + T +E E L K
Sbjct: 573 EQAHSVHERSLELESLLHTSKSDAEVAHTRTQDLEN-ELNTANE-KFKEVEADLEQYRSK 630
Query: 419 TFQTFASDWSQCSNISFHKLLNRFDSNNALHKEMLAVLAAVTEVIKEQGGKETTTEYFAA 598
Q SD + L +S + KE++ L +TE K+ + EY
Sbjct: 631 VSQ--LSDELEAYQTKAASLEAVMESASEKEKELVESLGQITEEKKKL--ELLVLEYEEK 686
Query: 599 LMETLKASE-LEDNL 640
E LK + LE+ L
Sbjct: 687 TEEYLKEKQSLEERL 701
>07_03_1735 +
29126170-29126227,29126368-29126711,29126790-29126928,
29127028-29127668
Length = 393
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -1
Query: 708 NCLRSTACGTALMPIDSKVIVATKLSSSSD 619
NC+ S+ C +A P++SKV ++ ++++D
Sbjct: 3 NCMGSSKCASASAPLESKVTRSSNSTTTTD 32
>03_06_0266 +
32746379-32746836,32747898-32748273,32748367-32748640,
32750605-32750789
Length = 430
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 96 LDQNSKAKRRGNDGRKDSHQIRTRKFKNTG-RWQNPGFFRKT 218
LDQ+ KAK +G+ S + KN G W FFR+T
Sbjct: 121 LDQSGKAKHKGHSQFDRSLESSPYTLKNRGSMWGYKRFFRRT 162
>03_05_0190 -
21770610-21770641,21770741-21770811,21771058-21771168,
21771249-21771500,21771584-21772086,21772188-21773234,
21773361-21773768,21773814-21773956,21774020-21774053
Length = 866
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 173 QKYREMAKSRFFQENLGSTG 232
QKY E+AK F LGSTG
Sbjct: 213 QKYAELAKKNKFPHRLGSTG 232
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 173 QKYREMAKSRFFQENLGSTG---LTQQAVSKHEAMMTYG 280
QKY E+AK F+ LGS G + +Q + E M G
Sbjct: 252 QKYAELAKKNKFRHRLGSAGYAPMVEQWTKEEEEMRKKG 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,324,056
Number of Sequences: 37544
Number of extensions: 333353
Number of successful extensions: 972
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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