Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11f06
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical ... 66 2e-11
AF038622-1|AAB94152.1| 358|Caenorhabditis elegans Hypothetical ... 31 0.62
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 31 0.62
Z66520-6|CAA91385.1| 226|Caenorhabditis elegans Hypothetical pr... 31 0.82
U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain (pr... 29 3.3
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 5.8
U29380-11|AAR12987.1| 501|Caenorhabditis elegans Hypothetical p... 28 5.8
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 5.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 5.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 5.8
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 5.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 5.8
U13019-5|AAC24444.1| 994|Caenorhabditis elegans Hypothetical pr... 28 7.6
>AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical
protein Y46E12BL.2 protein.
Length = 1334
Score = 66.1 bits (154), Expect = 2e-11
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Frame = +2
Query: 437 SDWSQCSNISFHKLLNRFDSNNALHKEMLAVLAAVTEVIKEQGGKETTTEYFAALMETLK 616
S ++ C+N +F + + S +++ E+++VLAA+ EVIKE+ GKE+ EY AALM L+
Sbjct: 95 SGFTACTNPAFDSVNRVWKSGSSIQAEVVSVLAAIAEVIKERDGKESDVEYCAALMTALE 154
Query: 617 ASELED--NLVATITLLSMGIKAVPQAVLRKQF 709
S L + A LL + ++ VP+ VL+ QF
Sbjct: 155 GSSLGNPRRTAAIAYLLHLIVRKVPKEVLQAQF 187
>AF038622-1|AAB94152.1| 358|Caenorhabditis elegans Hypothetical
protein R07C12.3 protein.
Length = 358
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 368 EGSESEYSGTLRSGTFKTFQTFASDWSQCSNISFHKLLNRFDSNNALH 511
EG+ + G+L FKTF D Q I +H L F+++ H
Sbjct: 48 EGTFNNLKGSLLMAIFKTFANVRMDTQQADGIIYHHSLQEFNTSVYAH 95
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 128 KRWQKGQSSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSKHEAMMTYGHKSNK 295
+RW K Q ++ K+RE+++SR S + +++ K + G KS K
Sbjct: 657 RRWDKTQQKELQNELSKFRELSRSRSTTPGEKSLEIQEKSGEKSQKPAKKGQKSEK 712
>Z66520-6|CAA91385.1| 226|Caenorhabditis elegans Hypothetical
protein F49E12.8 protein.
Length = 226
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 185 EMAKSRFFQENLGSTGLTQQAVSKHEAMMTYGHKSNKTKSDAENELTIVKELEN 346
EMA R + S G T+ + ++ + Y H+ SD + +LT++++L++
Sbjct: 129 EMAMLRSINRSQYSKGSTEGSTAEFSSESLYKHEYEDKSSDDDEDLTVIQQLKS 182
>U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform b
protein.
Length = 849
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 72 YEILKWVNLDQNSKAKRRGNDGRK--DSHQIRTRKF 173
Y+I W +N KA+ NDG + HQI R++
Sbjct: 811 YDITSWATCKKNKKAELISNDGCRWTKEHQINKRRY 846
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +2
Query: 95 FRSKLKGKTKGKRWQKGQ---SSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSKHEA 265
F K++G+ + RW + S+ +N I+K + ++ + S L E
Sbjct: 4799 FEVKIQGEPEDVRWLRDANVISAGANAIIEKIDDTT----YRLIIPSADLKDAGEYTVEV 4854
Query: 266 MMTYGHKSNKTKSDAENELTIVKELENMSVKTGDE 370
+ G + K + + + IV+ LEN+ + GD+
Sbjct: 4855 INESGKAKSDAKGEVDEKPEIVRGLENIEIPEGDD 4889
>U29380-11|AAR12987.1| 501|Caenorhabditis elegans Hypothetical
protein ZK546.2c protein.
Length = 501
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 80 TKMGKFRSKLKGKTKGKRWQKGQSSNSNPKIQKYREMA-KSRFFQENLGSTGL 235
T+MG SK K R G+S S + K+ EMA KSR Q L TGL
Sbjct: 239 TEMGNDSSKTKSIGDNARKIIGKSGPSTSTVNKHLEMASKSRILQ--LKGTGL 289
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +2
Query: 95 FRSKLKGKTKGKRWQKGQ---SSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSKHEA 265
F K++G+ + RW + S+ +N I+K + ++ + S L E
Sbjct: 4159 FEVKIQGEPEDVRWLRDANVISAGANAIIEKIDDTT----YRLIIPSADLKDAGEYTVEV 4214
Query: 266 MMTYGHKSNKTKSDAENELTIVKELENMSVKTGDE 370
+ G + K + + + IV+ LEN+ + GD+
Sbjct: 4215 INESGKAKSDAKGEVDEKPEIVRGLENIEIPEGDD 4249
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +2
Query: 95 FRSKLKGKTKGKRWQKGQ---SSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSKHEA 265
F K++G+ + RW + S+ +N I+K + ++ + S L E
Sbjct: 4799 FEVKIQGEPEDVRWLRDANVISAGANAIIEKIDDTT----YRLIIPSADLKDAGEYTVEV 4854
Query: 266 MMTYGHKSNKTKSDAENELTIVKELENMSVKTGDE 370
+ G + K + + + IV+ LEN+ + GD+
Sbjct: 4855 INESGKAKSDAKGEVDEKPEIVRGLENIEIPEGDD 4889
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +2
Query: 95 FRSKLKGKTKGKRWQKGQ---SSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSKHEA 265
F K++G+ + RW + S+ +N I+K + ++ + S L E
Sbjct: 4799 FEVKIQGEPEDVRWLRDANVISAGANAIIEKIDDTT----YRLIIPSADLKDAGEYTVEV 4854
Query: 266 MMTYGHKSNKTKSDAENELTIVKELENMSVKTGDE 370
+ G + K + + + IV+ LEN+ + GD+
Sbjct: 4855 INESGKAKSDAKGEVDEKPEIVRGLENIEIPEGDD 4889
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +2
Query: 95 FRSKLKGKTKGKRWQKGQ---SSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSKHEA 265
F K++G+ + RW + S+ +N I+K + ++ + S L E
Sbjct: 4159 FEVKIQGEPEDVRWLRDANVISAGANAIIEKIDDTT----YRLIIPSADLKDAGEYTVEV 4214
Query: 266 MMTYGHKSNKTKSDAENELTIVKELENMSVKTGDE 370
+ G + K + + + IV+ LEN+ + GD+
Sbjct: 4215 INESGKAKSDAKGEVDEKPEIVRGLENIEIPEGDD 4249
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +2
Query: 95 FRSKLKGKTKGKRWQKGQ---SSNSNPKIQKYREMAKSRFFQENLGSTGLTQQAVSKHEA 265
F K++G+ + RW + S+ +N I+K + ++ + S L E
Sbjct: 4799 FEVKIQGEPEDVRWLRDANVISAGANAIIEKIDDTT----YRLIIPSADLKDAGEYTVEV 4854
Query: 266 MMTYGHKSNKTKSDAENELTIVKELENMSVKTGDE 370
+ G + K + + + IV+ LEN+ + GD+
Sbjct: 4855 INESGKAKSDAKGEVDEKPEIVRGLENIEIPEGDD 4889
>U13019-5|AAC24444.1| 994|Caenorhabditis elegans Hypothetical
protein T12A2.5 protein.
Length = 994
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 578 TTEYFAALMETLKASELEDNL 640
+TEY AL++ LKASE DNL
Sbjct: 923 STEYVDALVDLLKASETFDNL 943
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,644,132
Number of Sequences: 27780
Number of extensions: 318235
Number of successful extensions: 985
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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