Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11f05
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.7  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   8.3  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 382 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 513
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 199 DIIVNAQINSEDENVLDFI 255
           D I   +IN +DENVL FI
Sbjct: 45  DDINEGKINMDDENVLLFI 63


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 316  SSPQLRLLYKNAYSAVSCGNYSI 384
            SSP   L+ ++A  A SCG  S+
Sbjct: 1257 SSPATALMLQHAPPAYSCGTVSV 1279


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +1

Query: 175 ANTSNITPDIIVNAQINSEDE 237
           +NTSNI+  +I++ ++ S D+
Sbjct: 91  SNTSNISKTVILSDKLESSDD 111


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 382 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 513
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 382 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 513
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 119 DETTYTKRLQVMIEYIKRTNADEPTPNVIG 30
           ++  Y K+L   I YI++     P P   G
Sbjct: 98  NDNNYNKKLYYNINYIEQIPVPVPVPIYCG 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,298
Number of Sequences: 438
Number of extensions: 3093
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)