Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e23
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   2.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.2  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   5.6  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    25   7.4  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   7.4  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 642 KLHKGWYRVGIYIVNRFSSDHHRSNGTLSSITAPVGPSPIFFPS 511
           K+ + +YR GIYI+NR S ++     + S+  + +   P + P+
Sbjct: 536 KIAEAYYRYGIYILNRKSENY--LEDSFSAFVSSLRKDPNYAPA 577


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 430 TEAVKKPEKQDEDNS-DSNTQRRHSGDR-GREKYRRWTDR 543
           +++ +K +K  +D   DS   R HS  +    K R WTDR
Sbjct: 617 SKSAEKDKKDKKDKKEDSKRSRSHSVSKPDSSKLRTWTDR 656


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 141 KMGSNDKTRANNREKK 188
           KM S++KTR+ NRE+K
Sbjct: 157 KMTSSEKTRSENRERK 172


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 40  GVIQFHATHELYMDSAMNNTIQNKDVKNKS 129
           GV++FH    L+  S  +  IQ + VK+ S
Sbjct: 86  GVLRFHRPLHLFQTSECHELIQEESVKSPS 115


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 611 IPTLYHPLCNFLSDN 655
           +PTLYH  C  L+DN
Sbjct: 526 LPTLYHGSCALLTDN 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.124    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,569
Number of Sequences: 5004
Number of extensions: 40926
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)