Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e23
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0131 - 15576422-15577021                                         33   0.20 
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942...    32   0.47 
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79...    30   1.9  
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    29   2.5  
09_01_0019 + 403078-404211                                             29   3.3  
04_01_0166 - 1861750-1862181,1862317-1863873                           29   3.3  
09_04_0506 - 18188785-18190599                                         28   5.8  
08_01_0108 - 791835-792398                                             28   5.8  
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381...    28   7.7  

>02_03_0131 - 15576422-15577021
          Length = 199

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 457 QDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSPITPVVVRRES 597
           +D D+ D +  +    DR R++ RR  +R R R++SP      RR S
Sbjct: 32  RDRDHRDRDRDKERDRDRDRDRERRRGERDRKRSRSPSADRSHRRHS 78


>09_04_0747 +
           19892090-19893304,19893471-19893602,19894168-19894215,
           19894697-19894766,19894936-19894963,19896021-19896519
          Length = 663

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -2

Query: 665 ESLGCLTGNCIRDGIELVFI-LSTDSLLTTTGVMGL*ARLRPLSVHRRYFS--LPLSPEC 495
           + L C+     RD IE VF+ L   +LL   GV     + R +    ++ +  L L+P C
Sbjct: 12  KKLECIISRLPRDLIEQVFLSLPVKTLLNCIGVC---KQWRSIIQDPKFVTSHLQLAPHC 68

Query: 494 LLCVFESELSSSC 456
            L  F  EL SSC
Sbjct: 69  ALLFFPRELVSSC 81


>08_01_0107 -
           789217-789984,790070-790219,790303-790890,790968-791093
          Length = 543

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 436 AVKKPEKQDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSPITP 576
           A + P K D  N  +  +     D+G+ + RRW  R ++ + SP  P
Sbjct: 18  AFRSPSKDDSPNKAARLRDDTDDDKGKRERRRWLFR-KSSSPSPAPP 63


>12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,
            7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 156  DKTRANNREKKDGDPS*SRSTKTGSGIGRTSQTIKP 263
            + T   N EKKD   +     ++ SGI RTS+++KP
Sbjct: 1137 ETTITENAEKKDDISTDHSPVRSSSGITRTSESMKP 1172


>09_01_0019 + 403078-404211
          Length = 377

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 433 EAVKKPEKQDEDNSDSNTQRRHSGDRGREKYRRWTDR 543
           E  K   K   D  +  T R  S  RGR K+RR T R
Sbjct: 201 ERAKSGRKHSRDE-EKKTSRHRSSSRGRSKHRRSTKR 236


>04_01_0166 - 1861750-1862181,1862317-1863873
          Length = 662

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 544 GRNRAQSPITPVVVRRESVDNINTNSIPSLMQFPVR-QPKD 663
           G+  + +PIT +VVR++ V ++    +P + + PV+ QP+D
Sbjct: 115 GKGISNAPIT-LVVRKKGVPDLTLVDLPGITRVPVKGQPED 154


>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 448 PEKQDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNR 555
           PE++  D  D+  +R    DR RE+ R   DR R R
Sbjct: 509 PERRHRDERDAGRERERERDRDRERER---DRDRER 541


>08_01_0108 - 791835-792398
          Length = 187

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 487 QRRHSGDRGREKYRRWTDRGRNRAQSPITPVVVRRE 594
           +RRHS  R R  +RR   RGR    + +  VVV  E
Sbjct: 45  ERRHSWRRRRRPWRRGGARGRAEVAAVLAEVVVADE 80


>07_03_1316 +
           25736931-25737206,25737276-25737329,25738036-25738189,
           25740235-25740313,25740413-25740492,25740588-25740654,
           25741548-25741619,25742071-25742223,25742309-25742392,
           25742811-25742877
          Length = 361

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 457 QDEDNSDSNTQRRHSGDR-GREKYRRWTDRGRNRAQSPITPVVVRRESVDNIN 612
           +D+       +R  S DR GR++YR    R R+R++S  TP   RR   D+++
Sbjct: 263 RDDYRERDYRKRSRSRDRYGRDRYRERDYRRRSRSRS-YTPDDYRRRGRDSVS 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.124    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,671,627
Number of Sequences: 37544
Number of extensions: 255360
Number of successful extensions: 670
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)