Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc11e23
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 33 0.14
AF038609-6|AAK29795.1| 245|Caenorhabditis elegans Hypothetical ... 30 1.7
Z81096-2|CAB03162.1| 264|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 29 3.0
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 29 3.0
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 3.9
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 3.9
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 27 9.1
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 27 9.1
AB038502-1|BAB11967.1| 232|Caenorhabditis elegans galectin LEC-... 27 9.1
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 433 EAVKKPEKQDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSPITPVVVR 588
E K+ EK+ E + +R ++ REK ++ + R + + TPV++R
Sbjct: 237 EREKEREKEREKEREKQKEREKEREKEREKEKKREEEARRKKEEASTPVIIR 288
>AF038609-6|AAK29795.1| 245|Caenorhabditis elegans Hypothetical
protein C54E4.1 protein.
Length = 245
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 582 HHRSNGTLSSITAPVGPSP 526
HHRSN T S+T+ V P P
Sbjct: 203 HHRSNSTKKSVTSSVSPKP 221
>Z81096-2|CAB03162.1| 264|Caenorhabditis elegans Hypothetical
protein K03H4.2 protein.
Length = 264
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 535 TDRGRNRAQSPITPVVVRRESVDNINTNSIPSLMQFP 645
+D GR R+ + ITP + E+ DN+ IP + P
Sbjct: 103 SDTGRRRSVNLITPSPIPEETEDNLTETPIPVVEHIP 139
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 448 PEKQDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNR 555
PE +DE D + S +R RE +R+ ++ R+R
Sbjct: 117 PESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDR 152
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 448 PEKQDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNR 555
PE +DE D + S +R RE +R+ ++ R+R
Sbjct: 243 PESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDR 278
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 442 KKPEKQDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSP 567
KK K+ + + + + +RR S R R R +R R R++SP
Sbjct: 77 KKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRRSRSP 118
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 442 KKPEKQDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSP 567
KK K+ + + + + +RR S R R R +R R R++SP
Sbjct: 77 KKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRRSRSP 118
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 141 KMGSNDKTRANNREKK--DGDPS*SRSTKTGSGI 236
K S+DKT+ + RE+K DG+PS +T+ + I
Sbjct: 780 KPNSDDKTKTSVRERKETDGEPSEDNNTQKAAPI 813
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 141 KMGSNDKTRANNREKK--DGDPS*SRSTKTGSGI 236
K S+DKT+ + RE+K DG+PS +T+ + I
Sbjct: 780 KPNSDDKTKTSVRERKETDGEPSEDNNTQKAAPI 813
>AB038502-1|BAB11967.1| 232|Caenorhabditis elegans galectin LEC-11
protein.
Length = 232
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 633 KGWYRVGIYIVNRFSSDHHRSNGT-LSSITAPVGPSPIFFPSP 508
+G RVG F HH GT + + PVGP+PI P
Sbjct: 130 RGDLRVGKIHFENFK--HHNGGGTEIGVMQMPVGPTPIVVAQP 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.311 0.124 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,020,973
Number of Sequences: 27780
Number of extensions: 232195
Number of successful extensions: 543
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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