Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e23
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.0  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 499 SGDRGREKYRRWTDRGRNRAQSPITPVVVRRESVDNIN 612
           S +  +EK+RRW        +    P   R E +D+++
Sbjct: 445 SFEDAKEKFRRWVSTMSRPFEVRYDPYTQRVEILDSVD 482


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 656 GCLTGNCIRDGIEL 615
           G L G C R+GIEL
Sbjct: 551 GTLYGRCKREGIEL 564


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 541 RGRNRAQSPITPVVVRRESVDNINTNSIPSLMQFPVRQP 657
           +GR     P+  V  +  S+DNIN  S  S    P+  P
Sbjct: 197 KGRLVITEPVGSVRPKFPSMDNINGLSTESKADLPLLCP 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.124    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,552
Number of Sequences: 438
Number of extensions: 3248
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)