Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e22
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1005 + 23249040-23249228,23250453-23250574,23250654-232508...    32   0.24 
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183...    27   6.9  

>07_03_1005 +
           23249040-23249228,23250453-23250574,23250654-23250800,
           23250932-23250998,23251763-23251836,23252010-23252102,
           23253433-23253550,23254340-23254402,23254774-23254806,
           23255325-23255399
          Length = 326

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -1

Query: 261 ARQPVACRAAPTGCRAGLXAARL---PCKCAAPXYSMXHLKLFVXICYPRIWGQAEAYRW 91
           A  P+ CRAA T  R+G  A RL   P   A+P  S    +     C    W + +A R 
Sbjct: 5   ASPPLPCRAAATASRSGRPAPRLLGPPPPPASPLLSSASARFPRAPCNAARWSRRDAVRV 64

Query: 90  C 88
           C
Sbjct: 65  C 65


>08_02_0113 - 12715888-12716181,12717443-12717602,12718327-12718368,
            12718443-12718465,12718616-12720653,12720736-12720965,
            12722207-12722329,12722438-12723010,12724684-12724733,
            12726828-12726923,12726987-12727394,12727609-12727795
          Length = 1407

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 213  GLXAARLPCKCAAPXYSMXHLKLFVXICYPRI-WGQAEAYRWCWTWTWRSGLTAVLQD 43
            G  A +LP + A   +S  +L L + IC+  + W   + Y W W W     +  +L D
Sbjct: 1218 GPLAEQLPAQSA---WSGNYLDL-LRICWECLSWKHNKCYPWNWVWQVFQAMKGILDD 1271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,379,697
Number of Sequences: 37544
Number of extensions: 182751
Number of successful extensions: 596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)