Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e22
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical pr...    64   4e-11
AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Relate...    64   4e-11

>Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical
           protein T01C1.2 protein.
          Length = 433

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 28/43 (65%), Positives = 36/43 (83%)
 Frame = +3

Query: 177 RRTYTEDELXSALRDIQSGRLGTRRAAVLYGIPRSTLRNKVNK 305
           RR YT ++L  A+ DI+ G+LGTRRA+V+YGIPRSTLRNK+ K
Sbjct: 151 RRNYTVEDLTQAVEDIRQGKLGTRRASVVYGIPRSTLRNKIYK 193



 Score = 37.1 bits (82), Expect = 0.008
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 180 RTYTEDELXSALRDIQSGRLGTRRAAVLYGIPRSTLRNKVNKFGLV 317
           R Y ++ L  A+R ++ G +   RA   +G+P STL  KV +  L+
Sbjct: 341 RKYDKNALDEAVRSVRRGEMTVHRAGSFFGVPHSTLEYKVKERNLM 386


>AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Related
           factor-1 protein.
          Length = 433

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 28/43 (65%), Positives = 36/43 (83%)
 Frame = +3

Query: 177 RRTYTEDELXSALRDIQSGRLGTRRAAVLYGIPRSTLRNKVNK 305
           RR YT ++L  A+ DI+ G+LGTRRA+V+YGIPRSTLRNK+ K
Sbjct: 151 RRNYTVEDLTQAVEDIRQGKLGTRRASVVYGIPRSTLRNKIYK 193



 Score = 37.1 bits (82), Expect = 0.008
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 180 RTYTEDELXSALRDIQSGRLGTRRAAVLYGIPRSTLRNKVNKFGLV 317
           R Y ++ L  A+R ++ G +   RA   +G+P STL  KV +  L+
Sbjct: 341 RKYDKNALDEAVRSVRRGEMTVHRAGSFFGVPHSTLEYKVKERNLM 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,254,338
Number of Sequences: 27780
Number of extensions: 120183
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)