Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e22
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             81   9e-18
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          33   0.001

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 80.6 bits (190), Expect = 9e-18
 Identities = 37/47 (78%), Positives = 42/47 (89%)
 Frame = +3

Query: 174 GRRTYTEDELXSALRDIQSGRLGTRRAAVLYGIPRSTLRNKVNKFGL 314
           GRR YTE+EL +ALRDIQSG+LGTRRAAV+YGIPRSTLRNKV K  +
Sbjct: 587 GRRAYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAM 633



 Score = 41.5 bits (93), Expect = 5e-06
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 180  RTYTEDELXSALRDIQSGRLGTRRAAVLYGIPRSTLRNKVNK 305
            R Y  D L  A+R +Q G +   RA   YG+P STL  KV +
Sbjct: 1041 RNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKE 1082



 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 45  PVEQPLDLSAK 77
           P +QPLDLSAK
Sbjct: 508 PADQPLDLSAK 518


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +3

Query: 132 RLXRTALDGXSNXTGRRTYTEDELXSALRDIQSGRLGTRRAAVLYGIPRSTLRNKVNKFG 311
           R  R  +D        ++++++ L +AL  +++G +   +A+  +GIP STL     + G
Sbjct: 447 RAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREG 506

Query: 312 L 314
           +
Sbjct: 507 I 507


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,813
Number of Sequences: 438
Number of extensions: 1496
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)