Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc11e19
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   4.2  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   4.2  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   7.4  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   9.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.7  
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    25   9.7  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   9.7  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 322 CNYHRRDRAVCRKSKTPTPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 486
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = +2

Query: 404  WNRCLEHNYTREI--VRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVEGGDACAP 577
            WN  +   Y+  I  +R +    +P N   L           FL P+ T +V GG+    
Sbjct: 1016 WNAPIAITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVVGGNVLTS 1075

Query: 578  EYPGTASCKSAGVCSSAGQQMDCVT 652
            +       K+  +C+++   M+ +T
Sbjct: 1076 QRITDVILKAFSICAASQGCMNNLT 1100


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 295 ARILDLEVCCNYHRRDRAVCRKSKTPTPQDVS 390
           A +L+ ++C NYH+R  AV      P   D +
Sbjct: 214 AGLLEEDLCANYHKRLEAVSLDFLPPAYNDTA 245


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 464 PVPSNRNTLSHSCTERHA 517
           P+PSN  TL  S  +RHA
Sbjct: 385 PIPSNVETLRSSLPQRHA 402


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 256  KSSVIILIDAVMTARILDLEVCCNYHRRDRAVCRKSKTPTPQDVSWHS 399
            + S +I ID   T  +  L++ C Y  R R V +     + Q V WHS
Sbjct: 1885 RQSSVIKIDPNETGYV-PLDLACLYPLRIRPVSKLGFLWSNQIVDWHS 1931


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 9   FVRGVRVCGSC*NMFGSCVILTVFVNSKWKSF 104
           F  G  VCGSC  + G  +I T    S+W++F
Sbjct: 34  FSSGDTVCGSCGLVLGDRIIDT---RSEWRTF 62


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 567 ASPPSTETVAAGGKNN 520
           A  PST+++AAGG NN
Sbjct: 70  AFSPSTKSIAAGGLNN 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,406
Number of Sequences: 5004
Number of extensions: 52878
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)